RNA id: XM_022686778.1


Basic Information

Item Value
RNA id XM_022686778.1
length 3389
RNA type mRNA
GC content 0.52
exon number 28
gene id LOC103021983
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45615562 ~ 45785454 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGctggagctggagagagagggggagagagagagagagagagagagagagagagagatagtgtgtgtgagagctgctGCAGGATGAGATGATGACCGGGGCTCTGCTGGTTCCCCGCGCCGCTCTCTGAacttccagcagcagcagcagcagtagagcCGGGGTCTGCCTCTTCCTCCTGCTCCACACTCCTCTGTCCTGATGGCCGGAGCGCAGCCGGGAGTGCACGCGCTGCAGCTGAAACCTGTGGCCGTGCCGGAGAGTCTGAGGAGCGGCAGCAAGTTCATGAAGTGGGAGGATGACTCTACCACTGTGACTCCAGTGACATTAAAAGTTGATCCCCAGGGCTACTTTCTACTTTGGACTGATCAGAATAAGGAGACAGACCTTCTGGACATTTCTTCTATCAAGGATGCCCGGACCGGGAAATATTCCAGAACACCCAAGGATGCTAAAGTGCGTGAGCAGCTGGGTGTGGCCACTCTGGTGGGGAAGATGGAGAACAGGATCCTGACGGTGGTGACTGGTCCAGACATGGTCAACATCACCTACCTAAATTTCATGGCCTTTCAGGATGAGGTGGCCAAGGAGTGGGCTGAAGAGCTTTTTAAGTTGGCCTCAAACCTCCTGGCTCAAAACATGTCCCGGGAGTCCTGTTTAGAAAAAGTCTATGCTagactgctgctgcagctcaaccCTGAGGGATGTATTCCTGTGAAAAATATCTTCCGGGCGTTTTCAGCAGACAGGAAGCGGGTCGAAACTGCTTTAGAGAACTGCAGCCTTCCATCTGGACGAAATGACTTTATCCCGGAGCAGCAGTTTACGAAAGAAATATACAGAGTGTTCCTCAACAGCATCTGTCCCCGGAAGGACATCGATACCATCTTCTCAGAAATTGGTGCTAAGAGCAGACCATACCTCACAGTGGAGCAGATGACAGACTTTATCAACAATAAGCAGCGAGACCCCCGGCTGAATGAGATTCTGTACCCGCCCCTGAAGCCCGAGCAGGTGCAGGCATTGGTGGAGAAGTACGAGCCCGACGACATGCTCTGCAAGCGAGGTCAGATTTCTGTGGAGGGCTTTGGGAGGTATCTCAGTGGCGAGGAGAACAGCATCATTCCGCCTGAGAAATTGGACCAGAGTGAAGATATGATGTTCCCTCTTTCTCACTACTTTATTAATTCCTCCCACAACACCTACCTCACAGCGGGGCAGCTGGCAGGGAACTCGTCAGTGGAGATGTACAGGCAGGTGCTGCTCTCTGGCTGCCGCTGTATAGAGCTGGACTGCTGGAAGGGTCGCACCACAGAGGAGGAGCCTATCATCACCCATGGATTCACCATGACCTCTGAAATCTCCTTTAAGGAAGTGATTGAGGCCATCGCTGAAAGTGCATTCAAGACATCTCCTTTCCCCGTCATCCTTTCGTTCGAGAACCATGTGGACTCCCCCAAGCAGCAGGCTAAGATGGCAGAGTACTGCAGATCAATATTTGGAGACGCTTTGCTCACAGAGCCACTGGAGAAATACCCACTGGATTGTGGGTCACCTCTGCCCAGTCCCATGGACCTGCTGGGTAAAATCCTCATCAAGAACAAGAAGAACTCTCACAAGGATGAGGGCAGCACCAAGAAGAAGCTTACTGAGCAAACCTCCAACACCTGCAGCGACACATCCAGCATGTGTGAGCCGTCCTCTCCCAGTGCAGGATCAGCGAATCAGGAGCTTCCAGACTCCAGTCAGCCAAGCTCAGAGGCCAGTGACGGCAGAATGCAGGGAAGAAAGTCTATCGGTGAGGTTGAAGCTGAGAGtgaggatgaagatgatgaagatgatgactGTAAAAAATCCATGGATgagGGGACAGCAGGCAGTGAAGCGTTTGCCACTGAGGAGATGTCTAACCTGGTCAACTACGTTCAGCCGGTCAAGTTCCACTCATTCGAGGCATCAAAAAAAACTAATAGAAGCTATCACATGTCATCGTTTGTGGAGACTAAGGCCCTGGAACAGCTGACCAAGTCCCCAGTGGAATTTGTGGAGTATAACAAACTCCAGCTCAGCAGACTCTACCCCAAGGGCACCAGGATGGACTCCTCCAACTACATGCCTCAGGTCTTCTGGAACGCAGGCTGCCAGCTTGTGGCATTGAACTTCCAGACCATAGATCTGCCCATGCAGCTGAATCTGGGGATGTTTGAGTACAATGGGAAGAGTGGATACAGACTGAAGCCTGAGTTCATGAGGAGGCCTGATAAGCACTTTGATCCCTTCACTGAGAGCACAGTGGATGGGATTGTAGCGCACACGCTATCTGTGAAGaTCATATCAGGCCAGTTCCTGTCTGATAGGAAGGTGGGCACCTATGTGGAGGTGGACATGTTTGGGCTTCCGGTGGACACAAAAAGGAAGGCATTTCGGACCAAAACATCCCCAGGCAATGCTGTCAATCCAGTGTGGGATGAGGAGCCCATAGTCTTTAAGAAGGTGGTTCTTCCAACTCTCGCGTCTTTGAGAATAGCCGTTTACGAGGACAACGGGAAGATCATTGGTCAGCGCATCATTCCAGTGAGCGCCATACGTCCTGGTTACCATTACATAGGGCTGAGAAATGAGAAGAACCAGACACTAACGCTGCCTGCCATTTTTGTCTACATTGAAGTCAAAGACTATGTCCCTGACACTTTCGCAGATGTGATTGAGGCGCTGTCCAATCCCATTCGCTACATCAGCCTGATGGAGCAGAGAGCCAGTCAGCTGGCAGCTCTTACTCAGGAGGAAGGAGAACAGGAGGAGAACAGTAAGATAGATGTGGTTAGAGGAGAGGTGGTGACAGAGCCGAAACCTGACGTGCAGCGAGCTCCAGAAGAGAATGGAACCAATCATGCTCCAGTCATCACTCCAAAACCACCCTCAGTGGGTAGCCACCACTCACACCCCTCAGGATCGGTGAAGCCACAAGTTCCCAGGCATGAAGATGTGAATCAGGGTGTTTTGACAGAGGTGGAGGCTCAGACGGTGGAGGAGCTGAAGCAGCAGAAGGCGTTTGTGAGGGAGCAGAGGAAGCACTATAAGGAGCTGAAGGAACTGGTAAAGAAGCACCATAAGAAAACCACAGAAATGATTAAAGAGCACACGGCCCGGCATAGTGAGCTACATAGTGAACAGCTCCGCCGCCGCTCTGCCCTCCACAAGAGCGCCAAACGCGATGatCATCTTCAGAGAATGCTCTGTGCACTGTGGAACAGGAGTTGGCTGCTCTGGAGCAGGAAAGTGCTCAGAAACTGTTGGAGCTgaaggaacagcagcagcagcaacttctcACCCTCAGGCAGGACCAGTACTACAGTGAGCAGTACCTCAAAGGCAAACATATTAAACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35473 lncRNA upstream 76623 45450009 ~ 45538939 (+) True G26390
TU35490 lncRNA upstream 86977 45524488 ~ 45528585 (+) True G26402
TU35391 lncRNA upstream 502594 45111185 ~ 45112968 (+) True G26322
TU35350 lncRNA upstream 749878 44865143 ~ 44865684 (+) True G26286
TU35342 lncRNA upstream 761052 44853881 ~ 44854510 (+) True G26280
TU35583 lncRNA downstream 311453 46066888 ~ 46067187 (+) True G26476
TU35587 lncRNA downstream 324870 46080305 ~ 46083403 (+) True G26477
TU35643 lncRNA downstream 600450 46355885 ~ 46357866 (+) True G26522
TU35653 lncRNA downstream 608449 46363884 ~ 46409990 (+) False G26529
TU35652 lncRNA downstream 653898 46409333 ~ 46409990 (+) True G26529
NM_001320207.1 mRNA upstream 45078 45560546 ~ 45570484 (+) True LOC103028976
XM_007229697.2 mRNA upstream 113916 45495681 ~ 45501646 (+) True LOC103022161
XM_015605208.2 mRNA upstream 174306 45433919 ~ 45441256 (+) True LOC103023922
XM_007229703.3 mRNA upstream 174306 45433922 ~ 45441256 (+) False LOC103023922
XM_022686646.1 mRNA upstream 655326 44872464 ~ 44960236 (+) False atad2b
XM_007232815.3 mRNA downstream 47319 45802754 ~ 45926101 (+) True plcb4
XM_007232817.3 mRNA downstream 47321 45802756 ~ 45926101 (+) False plcb4
XM_007232816.3 mRNA downstream 47322 45802757 ~ 45926101 (+) False plcb4
XM_007232819.3 mRNA downstream 47325 45802760 ~ 45926101 (+) False plcb4
XM_022686811.1 mRNA downstream 179039 45934474 ~ 45945832 (+) True lamp5
TU34777 other upstream 2121247 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 2190656 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 2193516 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 2252118 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 3099005 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 772960 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 2522832 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 2525330 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 2800362 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 2800362 48555797 ~ 48641905 (+) False G26995

Expression Profile