RNA id: XM_022686811.1


Basic Information

Item Value
RNA id XM_022686811.1
length 2421
RNA type mRNA
GC content 0.53
exon number 6
gene id lamp5
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45934474 ~ 45945832 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttattataccagggctcagagatgtgcatccggacaggactaaaatcaCCTTACGACCAGTTCAGCGAAAACAGTACGAAATTCAGCCTGTagaacatctgagaaaaacacatacatggtcgttccggacgagaataaaatcacagagggcacccccataaaagagaaaattaccccaggaccccctgaggaACTAATCCCGTCCTGATAGGGCTTTAGCGATAGTTTAAGGCAGTGTTAAAGAGAATCTAGATTTACTTGAGGTGTTTTATGCAATCTGGAATAGGTCCTAGAATCACCTCTGCTAAAGCAGTCGTGTCCTCACACTGTGTTCAGGTGTCCCGGATGAACAGTGATGTCCTGTCCCACTCTGTACACTCTTCTTTACAtctgcagtttaatctgaattTACACTCTGCATTAGTCTTTCTCTCGTTcaggagctgtgtgtgtgttagagttgcagtgtgtgtgtgtgtgtgtgtgtaggtatagGGTTATTAAGGACGCAGCTTCGTCCTCGCACGGCTGAGCTCACACGTTACTGCGCTGCAGCGGAGGCCACAAACGCGCGCGCGGGAGCAGCTGCAGCCTcgcgggaggaggaggaggacgttGGGGGCGGGTgagcgcgtgtgtgtgcgtgttggaGAGGGGGGGTGCAGCTCTTCTCCTCACTGTCCCGTTCACAGTGCAGGTATGGGCAGAGCAGCAGTGCGGGACTAGAGCTGCGCGTGCTCACTGGAACATCTACTGGACAGCAGGACAGTGCCCTGCTGACCCTCCACCGGACCCTCTCTGACCCCCGCGCGCGCCCTTTACAGCGTTTCTTCATCCTTTAGAAAGCTCCACGGAGCTTCAGAGATCCTCACAGAGCTTCACAGATCTTCACACGGCTCCACGCGACTCTGTACGGAAGTGTGGCAGCGCGCGGAGTGCCCGGATGTTGCCTCACCTGCACCTGCTGCGGCCGCGATGATCGGCTCGTGACGCGCTCCACAGCGCAGCAGAGCGCCGGTGCCGTcagcgcgcgcgcacacacgcaTCCATTTCTGCGCGTGAGCGTGTAggcgcgcgtgtgtgtgagcGCGTGAGGAAGAGTGAAAGAGGGGGAGAGCACCATGGACAGCGCGGTGGGCTTCTGCGTGCTGGgatgtTTGCTCCTGTCTTCGGTTCTGCTGGCggagcaggaggtggagaaccTGTCCGGACTGTCCCCAAACCCGGACAAGGATATCTTTGTGGTCCGGGAGAATGGGACCACCTGTCTGATGGCTGAGTTCGCTGTCAGATTCCTCATCCCGTATGATGTGCTCGCGCTCAACGGAATTGATcTCATCACAGAGCAGGCATCTCTGGCCCTCCCCCGTGGCGCACGCATCGAGGGCTCGTGCGGCAGCACTGAGGCCGAGCTCCACATCTCTTGGGTAAACAACGCCTACACACTCCGCATCTACTTTACCAAGgagaAGCGCACTATGGGCAGTGATGGAAAAGCGAAGGAGACTGAGATTTGGAAGATGAGTAAAGTCCAGCTGGTGTACAACACCTCAGATACGACACACTTCATCAACGCTTACAACCCGGGGAAACACACAGCCAGCACCCATCGTCTCTCAGCGTTGGTGACTCCAGGAGGCCGGTCGTATGTGTGTGCGGCTCAGCAGACCCTAACCCTCATTTCCAGTGACCACCAGAAGGGCATCACCATCTACATGTCCGACATCCAGATCCAGCCTTTCGACATCAAAAGCGACTTTGTGTTCAGTGAACCATATAAGTGCATCACGGACCAGAGGGAGCGTCTGGAGGAGACTCTGCCACTGGTGTTGGGCCTCATCCTGGCTCTCATCATcgtcatcaccatcaccatctaCCACTTCCACCTCAAACTGACCGCGCAGCAGCCCCAGCTGCCCCGGGACCGCTCCCTCTACAAGAACATGTAAAGACTCTCTATGCACCGCGGCCGAGGCCAGCCATCAGGGGAACGAGCCAGTACCTGCAAACACTGCACCCTGCTGTCCAGGGACCTCACAAGCTTCCCCAGCTTATTCCTCCACTGCCTGACCTTCTGCTCCCTGCGTTATGATTTCGGGTCAATtcctctgtttttgtttgtcgGTTCTTAATTGTTTTGCACATGTGTaaatgtaaaggtgtgtaaactACCAAACAGATCACTGCTATATTTGATGCATTTATTGAATATGTCATGGTGTGAGCCATACCAGTGTCACTCAGTGTAAAGTGTGCCAAACTAAAGCTAATCCAGTTGTATTGTAAAGGTACAGAGGCTGTACAATGAAGCTATTTTAAAGCTTACTGTGCCATATGGCTGATGCAATGAAACAAGAGATAAATCATGCAACATTTTGTGTGCAAAATTCtattcaaaaataaattattttatgtctGTC

Function

GO:

id name namespace
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0032584 growth cone membrane cellular_component
GO:0032590 dendrite membrane cellular_component
GO:0030425 dendrite cellular_component
GO:0055038 recycling endosome membrane cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35473 lncRNA upstream 395535 45450009 ~ 45538939 (+) True G26390
TU35490 lncRNA upstream 405889 45524488 ~ 45528585 (+) True G26402
TU35391 lncRNA upstream 821506 45111185 ~ 45112968 (+) True G26322
TU35350 lncRNA upstream 1068790 44865143 ~ 44865684 (+) True G26286
TU35342 lncRNA upstream 1079964 44853881 ~ 44854510 (+) True G26280
TU35583 lncRNA downstream 121056 46066888 ~ 46067187 (+) True G26476
TU35587 lncRNA downstream 134473 46080305 ~ 46083403 (+) True G26477
TU35643 lncRNA downstream 410053 46355885 ~ 46357866 (+) True G26522
TU35653 lncRNA downstream 418052 46363884 ~ 46409990 (+) False G26529
TU35652 lncRNA downstream 463501 46409333 ~ 46409990 (+) True G26529
XM_007232815.3 mRNA upstream 8373 45802754 ~ 45926101 (+) True plcb4
XM_007232817.3 mRNA upstream 8373 45802756 ~ 45926101 (+) False plcb4
XM_007232816.3 mRNA upstream 8373 45802757 ~ 45926101 (+) False plcb4
XM_007232819.3 mRNA upstream 8373 45802760 ~ 45926101 (+) False plcb4
XM_022686757.1 mRNA upstream 149020 45615564 ~ 45785454 (+) True LOC103021983
XM_007232827.3 mRNA downstream 123741 46069573 ~ 46076984 (+) True LOC103025099
XM_022668060.1 mRNA downstream 186741 46132573 ~ 46134116 (+) True LOC103030371
XM_007232836.2 mRNA downstream 214819 46160651 ~ 46178257 (+) True LOC103027027
XM_015601183.2 mRNA downstream 247197 46193029 ~ 46201498 (+) True LOC103027954
XM_007232840.3 mRNA downstream 247200 46193032 ~ 46201496 (+) False LOC103027954
TU34777 other upstream 2440159 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 2509568 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 2512428 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 2571030 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 3417917 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 582563 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 2332435 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 2334933 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 2609965 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 2609965 48555797 ~ 48641905 (+) False G26995

Expression Profile