RNA id: XM_022687064.1


Basic Information

Item Value
RNA id XM_022687064.1
length 1626
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC107197829
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46396499 ~ 46404613 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGTGGTGGGCTTGGCCCGGTCTCAGTCAGTCTCAGCAGGGTGTTTTACTACAGGCAGTTTTAAGTCCATTATCAGTGACCCGCTCCCGCCTGCACTCCTCACTCTGCGCCGGTTCGGTACACAGTCCGAGTCCGAGTTATACAGGTTAATCTCCGCTGTGGATCTATCTGGATGAAGGCTGGACGGTGTTGGACCTGTCTCTGGCGCTGCCGTGTGATTCAGTATGAGCGGATTCTCCGGTATAATACAGGTACTCACCACACTGCTGCTCCACCTACCACACCTACAGGTTTCAAAAGCTGTCGGCACACCCCACTCTAAagTGATGCTGTTTCATGAGGTTTGGGTTCGAAGCCTGTGCCGCTCCCTGGAGAAGATGGTATCAGTGGAACACGAGTACCCAGGCGGTGTGGAGCACATATTCAGTCCTGGCTGTGTGCCACTACAGCGTTGTGCTGGCTGTTGTAATGATGAAAAACTAGAGTGCTTCCCTACCCTTACACGTAACATTACAATGCAGCTGGTGAGGATAAGCCCAGCACAGAGGACGAGGCAGTATGTGCAGCTTTCATTTTTAGAGCATCATTCGTGTGAGTGCAGACCCAAACGGAGCCACAGAAGAAATCAAAGACAGAGGATCGGTAGCCCGcgcagaagaaaaaaaggaaaacatggaagGAGGAAAGAAGCAAACTTTTCCAAgggTCCTGATCATCATAGATAGTATGAGAATTCCCAGGCACTCTCTGTTTTTCATCtttaacacaaacacagatgGACATGAGCTCTGCCCACCACTCGTGAAAATGGACAATAAGCAGACGCATGTGGGATATAAATTATGACAAGAACTTCAGCTGTCTGTCTCCAGGGTGTTGCCCTCGCAGTTCACTGACAAAGAAGTGTTGTCAAGAGGAAGGAACTGGCAGAGCTGAATTCCTCTGTTCCTGTCTGCTTTGGTACCTTGTTGTCTCTTTGTAGTAGTTGACTCTGCTGTGGAAGTGAAAAGGACAAATAATGTTCACAAAGGGGAAAACTGATATTATCATTTGTAATAAGCTCAGGTCTAGTGCTGAGCAGTATTGATGAAACTGAACATCACAATGCTCTTCACAGATATAAAGTGTTGTTTGAAAGTTTGTGATCCGTTTACAAttgtctatatttctgcataaatttgacATAAAACTTTATCAAATTTTCTCACAAGTCTCAAAAGTAGAagagatctaaataaaacaaatattacacATGGTCATTTTACTGACCAGAAGCGGGTCACACCAGACACTGAAAGCAAAAAGGTTCACAAGAATTTGCCACTTACAGATATGTTACTGGATATTTttcctaaatatataaatgactaAATCATATGTGTtattggtttgatttggttctCTTAATCTATTTTTAGgacttttaatttgatttgaatcagataaatgtataatactTTCAAATCTATGCAGAAATAAAGACAATTCTAAAGGGTTGACAAGCTTTTAAGCACCACTGTACCGTTGCATAAATAAAGTGAATGACCTTGTGTTTCCAGACTACAtgagtaatttatttataagatattgttttgcacattttaaacaGCTTGTATGATTGGACAG

Function

GO: NA

KEGG:

id description
K16859 PGF; placenta growth factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35832 lncRNA downstream 34581 46361718 ~ 46361918 (-) True G26663
TU35757 lncRNA downstream 234400 46076136 ~ 46162099 (-) True G26605
TU35764 lncRNA downstream 329311 46066648 ~ 46067188 (-) True G26612
TU35706 lncRNA downstream 546907 45847617 ~ 45849592 (-) True G26564
TU35704 lncRNA downstream 551568 45843174 ~ 45844931 (-) True G26563
XR_002652516.1 lncRNA upstream 173674 46578287 ~ 46599431 (-) True LOC111197648
TU35951 lncRNA upstream 257506 46662119 ~ 46663963 (-) True G26751
TU35974 lncRNA upstream 700702 47105315 ~ 47106324 (-) True G26771
TU35987 lncRNA upstream 712969 47117582 ~ 47120006 (-) True G26783
TU36023 lncRNA upstream 794251 47198864 ~ 47199418 (-) True G26810
XM_007230708.3 mRNA downstream 1432 46387659 ~ 46395067 (-) False LOC103044046
XM_007230709.3 mRNA downstream 1432 46387659 ~ 46395067 (-) True LOC103044046
XM_022678311.1 mRNA downstream 21582 46364129 ~ 46374917 (-) True LOC111194350
XM_007230704.3 mRNA downstream 35673 46352209 ~ 46360826 (-) False LOC103043020
XM_022687038.1 mRNA downstream 35673 46352209 ~ 46360826 (-) True LOC103043020
XM_022687087.1 mRNA upstream 5843 46410456 ~ 46416421 (-) True actr10
XM_015607841.2 mRNA upstream 25864 46430477 ~ 46435925 (-) True naa30
XM_007230721.3 mRNA upstream 76032 46480645 ~ 46499667 (-) True peli2
XM_007230722.3 mRNA upstream 108026 46512639 ~ 46514813 (-) True LOC103047706
XM_022678319.1 mRNA upstream 129193 46533806 ~ 46535835 (-) False fkbp3
TU35796 other downstream 103693 46292087 ~ 46292806 (-) True G26636
TU35737 other downstream 460877 45935153 ~ 45935622 (-) True G26588
TU35470 other downstream 958914 45436109 ~ 45437585 (-) True G26388
TU35363 other downstream 1510698 44882778 ~ 44885801 (-) True G26295
TU35356 other downstream 1525820 44867094 ~ 44870679 (-) False ubxn2a
XR_001518806.2 other upstream 22804 46427417 ~ 46435925 (-) False naa30
TU35879 other upstream 114258 46518871 ~ 46521243 (-) False G26695
TU35877 other upstream 119035 46523648 ~ 46525996 (-) True G26695
TU35943 other upstream 129082 46533695 ~ 46535753 (-) True fkbp3
TU35957 other upstream 299734 46704347 ~ 46738736 (-) True G26754

Expression Profile