RNA id: XR_002648716.1


Basic Information

Item Value
RNA id XR_002648716.1
length 1816
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id LOC111189292
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 55483506 ~ 55487476 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTGCTCCGCCCCCTTTCTCCCAGAACAAGTATTTCTGAAGACTGACTGAAAACTACAGCGCAGCCTACTGGACCAGAAGAACAGCAGATTTTCCACCTGTATATCCActttctaTGATGTAGCAGCTGAGATAAGGCTATGTCACATCTTCACTCCttcaatagagagagagagagatggcaTCACATCGAAAGGAGCACAAGGAAAAAAGGTGCAGAAAAGCACACAGTTATACGGACAACAGGTTGTACCATGACATTTTGGAAGCCCTGAAATGGTGCCAGGTGAACAAGAGAAATTTCCTTGGAAATGTTTCACCTCCTCCGGTACTGGGCATGTCTGAAGATGAAGCAGAAGAGGCCTTTGCAAATCTGGACGCTCTAAATATACTGACTGAAGAGGACGAGAGATCCAACATACTAAGAACCTTTTCCTTCCTTTTTGTCAGGCTAGAAGACATGTCTCTGTTCCTAGATAATGTTAGAGACAAAATGGGCATGagagttttttgtgaattaatttaatgtttgtatatatttattagtatGTCGTAGTCCAAATTTctttaaggggttaaacttGCTTAAATACTTTTGTGTTTATATGCATGCTTATGCATAGTCTTTTTCTGTACATGGTTTCCATTTATTGATTACTGTGCAGTTTTAAACATGTGCAttctaataaaatacatttgtgtGTAAATCGTGTATGTACAAGCatcttctctttcattctcaGACATGCCCAGAATCTATGGTTCCAGATTCTCAATGCTCCATGTGTGTActcagagagtgagtgtgtgtatcaAATGAAGCAGTTGAATTCTGTTGTACTGTTGTGCgatggctgctgctgcctgattCACCTGTTGGATAAGCAAGCCATTTGCATTTTATAAAGCCTTTTAGCTATAGTTGTATAAGCAAATGCATGAAAAGGATAACAATGTTTGAAATTGTTTATTACTGAAGTAATCAGCTCACCAGAATGTGTACAAGAAAAAGAGatcaagaaagagagagggattagCATGCATCCATTGATGTTTACAACACTAGCAGTTTCCAAAGCATCATCTggtttgagagaaaaaaagacccTCCTCTCTTGTTCGCAATGTGTTGAAGCAATGATTACTATCTATCACAACAACAGAGCACAATGAATGCTGCTAAAGATGCTGGTACATGGTtcaatgaatgaatgggtggactgacacaacactaaatatataaaacaagatAAAGTGCTACAACCTCTTTCGCCTATGCTTTGATAAAATCTTACTTTTgcacaaaatacacaaatgGAAAAAGGGTTTCTTTTAGTTTCACATTGGATTGTCAAAGACAGACgcttaaactaaaacaggtTCCTTTACATTAGCCAAGCGAGAAAGTAGTGCTTCTTAACGTTAGTGGACAGCAAACTGGTAAAGCAAATTTATTTTCACAATATCTCTTCAACTTAGTCACCAAGAAAAgcatggaaaaataaaaagagagaggaaagttTTGGAAAGTGAAAGCTTTCACTGCTTCATGTGCATCACTCGTTGGCAGATGACCCGCCTTGTCTTAGAAGAAACTCATCACAAGGAATAAACTATACAATGCTGTCAGAAGCACAATTTTGCTATGCGATCCAGCTCGCGATGAGGCATAATCACCACAAACTAAATTCCCCCGAACAACTATTCCCCCAAAAACCCACTGCAAAGtcttatttcatttgttttctatTACTTTACAAAAATAGATCTGTAAGTGATGAACTGTCACAACACATTATGAGAGGCAAGTAAGTCAT

Function

GO: NA

KEGG:

id description
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38061 lncRNA upstream 18221 55462075 ~ 55465285 (+) True G28362
TU38058 lncRNA upstream 24206 55458993 ~ 55459300 (+) True G28361
TU38042 lncRNA upstream 93498 55380604 ~ 55390008 (+) False LOC103023616
TU37988 lncRNA upstream 318487 55163794 ~ 55165019 (+) True G28302
TU37986 lncRNA upstream 320550 55162490 ~ 55162956 (+) True G28300
TU38151 lncRNA downstream 54773 55542249 ~ 55564694 (+) True G28417
TU38222 lncRNA downstream 407148 55894624 ~ 55952107 (+) False G28460
TU38223 lncRNA downstream 462151 55949627 ~ 55960470 (+) True G28460
TU38383 lncRNA downstream 611187 56098663 ~ 56100801 (+) True G28588
TU38389 lncRNA downstream 634661 56122137 ~ 56122799 (+) True G28593
XM_022662984.1 mRNA upstream 2251 55467126 ~ 55481255 (+) False LOC103047723
XM_022662981.1 mRNA upstream 2251 55467128 ~ 55481255 (+) True LOC103047723
XM_022662985.1 mRNA upstream 2251 55467132 ~ 55481255 (+) False LOC103047723
XM_022662987.1 mRNA upstream 2251 55467134 ~ 55481255 (+) False LOC103047723
XM_022662986.1 mRNA upstream 2251 55467142 ~ 55481255 (+) False LOC103047723
XM_007253908.3 mRNA downstream 8630 55496106 ~ 55510485 (+) True LOC103047102
XM_007243166.3 mRNA downstream 44211 55531687 ~ 55539084 (+) True slc35f6
XM_022663014.1 mRNA downstream 53558 55541034 ~ 55559716 (+) True LOC103045772
XM_022663011.1 mRNA downstream 53558 55541034 ~ 55559716 (+) False LOC103045772
XM_022663020.1 mRNA downstream 53808 55541284 ~ 55559716 (+) False LOC103045772
TU37650 other upstream 1104200 54378241 ~ 54379306 (+) True G28072
trnas-aga_8 other upstream 1829776 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 1830568 53652857 ~ 53652938 (+) True trnas-aga_7
trnas-uga_10 other upstream 1830917 53652508 ~ 53652589 (+) True trnas-uga_10
trnal-cag_6 other upstream 1831289 53652135 ~ 53652217 (+) True trnal-cag_6
TU38445 other downstream 745263 56232739 ~ 56239729 (+) True LOC103029514
TU38475 other downstream 803280 56290756 ~ 56303210 (+) False LOC103033217
TU38502 other downstream 849704 56337180 ~ 56399441 (+) False sipa1l1
TU38768 other downstream 1914449 57401925 ~ 57402392 (+) True G28865
TU38889 other downstream 2322519 57809995 ~ 57812488 (+) False LOC103042006

Expression Profile