RNA id: XR_002649037.1


Basic Information

Item Value
RNA id XR_002649037.1
length 109
RNA type ncRNA
GC content 0.42
exon number 3
gene id LOC111190190
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60430861 ~ 60443507 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATATTTGTCCTttagaatgtgaaaatgtgcagCTGCTGAAATCAAACTGCTGTATTGCTGCTTGCTATGTGTGCagaggttgagagagagagagagagagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39785 lncRNA upstream 48605 60382041 ~ 60382256 (+) True G29679
TU39765 lncRNA upstream 73979 60356477 ~ 60356882 (+) True G29663
TU39764 lncRNA upstream 77731 60351318 ~ 60353130 (+) True G29662
TU39743 lncRNA upstream 142768 60287867 ~ 60288093 (+) True G29641
TU39740 lncRNA upstream 144918 60282585 ~ 60285943 (+) True G29639
TU39800 lncRNA downstream 20470 60463977 ~ 60519867 (+) True G29691
TU39856 lncRNA downstream 76835 60520342 ~ 60525051 (+) True c3h14orf2
TU39919 lncRNA downstream 246494 60690001 ~ 60690253 (+) True G29772
TU39923 lncRNA downstream 256838 60700345 ~ 60702123 (+) True G29775
TU39965 lncRNA downstream 384230 60827737 ~ 60827940 (+) True G29812
XM_007256665.3 mRNA upstream 148971 60279839 ~ 60281890 (+) True LOC103034839
XM_007256666.3 mRNA upstream 157572 60265837 ~ 60273289 (+) True LOC103035162
XM_007256658.3 mRNA upstream 339053 60061098 ~ 60091808 (+) True rhoj
XM_007256654.3 mRNA upstream 644200 59767382 ~ 59786661 (+) True LOC103031133
XM_007256655.3 mRNA upstream 665788 59753476 ~ 59765073 (+) True LOC103031439
XM_007256672.3 mRNA downstream 3198 60446705 ~ 60462048 (+) False LOC103036511
XM_007230914.2 mRNA downstream 42396 60485903 ~ 60490965 (+) True rd3l
XM_022663952.1 mRNA downstream 76843 60520350 ~ 60522292 (+) False c3h14orf2
XM_007230920.3 mRNA downstream 89235 60532742 ~ 60599366 (+) True ppp1r13b
XM_007230918.3 mRNA downstream 102449 60545956 ~ 60599366 (+) False ppp1r13b
TU39573 other upstream 832620 59590989 ~ 59598241 (+) False nme6
TU39514 other upstream 871109 59554326 ~ 59559752 (+) False atraid
TU39412 other upstream 1202162 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other upstream 1202299 59228311 ~ 59228562 (+) False LOC111194375
TU39407 other upstream 1209825 59220532 ~ 59221036 (+) True G29382
trnad-guc other downstream 1249706 61693213 ~ 61693284 (+) True trnad-guc
trnad-guc_1 other downstream 1253293 61696800 ~ 61696871 (+) True trnad-guc_1
TU40175 other downstream 1482599 61926106 ~ 61936083 (+) True LOC103046322
TU40444 other downstream 2395728 62839235 ~ 62843043 (+) False LOC103045797
TU40713 other downstream 2892227 63335734 ~ 63345693 (+) True G30362

Expression Profile