RNA id: XR_002649636.1


Basic Information

Item Value
RNA id XR_002649636.1
length 321
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC111191745
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 583710 ~ 588307 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTCTTACAGTTAGATGGTTAACTTTAGTATTCAGTCTTAACACAGGCACTATAGGATTATCTACAGTGGAAGCAGGACACCGTACCAAGTCAGCAGGATCTCAGTGGGGGAATTATCATGTCTGCAATTTTCATAAAGACTTCATGAGGCATTTTCAAACAGAAGTGTGTGGTTTTCTGGAGGAATCTACCTGCAGGAGCAGACCTTAATCCAGCCCTGCAAGAGCTCCATAATGGAGACTCTAGACCTGCTGTTCTAGTTGTGCCTCATATCACATCTAACCCTGAGAGCACAGTGCCAGACAGTGCCGAACGAATTCC

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21158 lncRNA upstream 45423 464564 ~ 538287 (+) True G15656
TU21152 lncRNA upstream 89372 464564 ~ 494338 (+) False G15656
TU21173 lncRNA upstream 90072 493270 ~ 493638 (+) True G15660
TU21171 lncRNA upstream 97256 459789 ~ 486454 (+) True G15659
TU21121 lncRNA upstream 138050 443166 ~ 445660 (+) True G15636
XR_002651095.1 lncRNA downstream 5348 593655 ~ 597730 (+) True LOC111194483
XR_002651092.1 lncRNA downstream 24730 613037 ~ 615239 (+) True LOC111194479
TU21270 lncRNA downstream 97766 686073 ~ 705802 (+) True G15724
TU21302 lncRNA downstream 821626 1409933 ~ 1412569 (+) True G15748
TU21305 lncRNA downstream 826875 1415182 ~ 1420808 (+) True G15749
XM_022678694.1 mRNA upstream 25308 551043 ~ 558402 (+) True LOC103023152
XM_022678704.1 mRNA upstream 59572 509572 ~ 524138 (+) True LOC103028849
XM_022667468.1 mRNA upstream 89341 483139 ~ 494369 (+) True LOC107196798
XM_022678667.1 mRNA upstream 115626 448393 ~ 468084 (+) True LOC107197531
XM_022678676.1 mRNA upstream 115626 460501 ~ 468084 (+) False LOC107197531
XM_022667504.1 mRNA downstream 12121 600428 ~ 609429 (+) True LOC111191737
XM_022678737.1 mRNA downstream 734215 1322522 ~ 1340800 (+) True LOC103025578
XM_022678744.1 mRNA downstream 734215 1322522 ~ 1340800 (+) False LOC103025578
XM_007245217.2 mRNA downstream 849499 1437806 ~ 1442109 (+) True cryab
XM_007245220.3 mRNA downstream 869163 1457470 ~ 1469889 (+) True LOC103029064
XR_002651096.1 other downstream 3921 592228 ~ 593633 (+) True LOC111194487
XR_002651100.1 other downstream 734209 1322516 ~ 1332791 (+) False LOC103025578
XR_002651098.1 other downstream 734209 1322516 ~ 1332281 (+) False LOC103025578
TU21431 other downstream 1092852 1681159 ~ 1682022 (+) True G15839
TU22663 other downstream 5584449 6172756 ~ 6177884 (+) False LOC103025913

Expression Profile