RNA id: XR_002649734.1


Basic Information

Item Value
RNA id XR_002649734.1
length 562
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC111191936
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58888723 ~ 58895340 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agctccattcacccccattcattttggactccctcgcgggctccctctagcggaaGTCTTGGAGGTGGTCAGTCTTTCCATACACTGGCTCTGGGGAAACTgttcagtttgtttgtttgtgggcGCTGGCAGCTCGACACGTGGTTGTCGAAGGAGGGTGTGGATATTATAGCATCAAGCCCCTGCAGACCCCCAGGAAACTCCACTGTGAATGGAAGTAAAAGGTTTCCAAGAATTGAGAGTGACCTCAGTTGAACCATGGCTGAACAAACAATGTCCAAGTCCTCAAAGACCCCTGAAAAGAATTCTTTGAAACATGAACATGTGCAAAAAATAGCACAGTTCTTTACGACCTCCAAACGAAGTGATGATCCTGCTCCACAAACCTTTACAGgaGATAAGAATATGTCTAGAGAAGCTGGTGAGTCCAGTCACACAGTGATCACAGAACACACTGTGGGATCCTTCAGTGATTCAGAAATGAGTTCTCCAAAACATCGGCTTAAGAAAAAATTCACACGTCTCTTCAACAATTCTAAACATTCTGGACGTCCTGATTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39289 lncRNA upstream 374 58888118 ~ 58888349 (+) True G29290
TU39275 lncRNA upstream 27896 58860500 ~ 58860827 (+) True G29276
TU39260 lncRNA upstream 38293 58849977 ~ 58850430 (+) True G29267
TU39256 lncRNA upstream 62987 58824249 ~ 58825736 (+) True G29263
TU39244 lncRNA upstream 108771 58779114 ~ 58779952 (+) True G29251
TU39299 lncRNA downstream 39671 58935011 ~ 58948580 (+) True G29299
TU39310 lncRNA downstream 81322 58976662 ~ 58979697 (+) True G29304
TU39324 lncRNA downstream 169133 59064473 ~ 59112299 (+) False mtmr9
TU39325 lncRNA downstream 169133 59064473 ~ 59112299 (+) False mtmr9
TU39408 lncRNA downstream 324236 59219576 ~ 59219829 (+) True G29383
XM_007256622.3 mRNA upstream 6532 58865600 ~ 58882191 (+) True LOC103021996
XM_022663662.1 mRNA upstream 68946 58804247 ~ 58819777 (+) True LOC103021664
XM_007258170.3 mRNA upstream 380248 58504802 ~ 58508475 (+) True LOC103031977
XM_022663632.1 mRNA upstream 407936 58457954 ~ 58480787 (+) True exoc2
XM_007258178.3 mRNA upstream 503203 58321036 ~ 58385520 (+) True gmds
XM_022678389.1 mRNA downstream 1997 58897337 ~ 58908006 (+) True LOC103037011
XM_015607694.2 mRNA downstream 30036 58925376 ~ 58934791 (+) True LOC103022293
XM_022663695.1 mRNA downstream 31660 58927000 ~ 58934791 (+) False LOC103022293
XM_022663697.1 mRNA downstream 31700 58927040 ~ 58934791 (+) False LOC103022293
XM_007256625.3 mRNA downstream 58761 58954101 ~ 58963663 (+) True LOC103022804
TU39139 other upstream 469906 58417394 ~ 58418817 (+) True G29155
TU38889 other upstream 1076235 57809995 ~ 57812488 (+) False LOC103042006
TU38768 other upstream 1486331 57401925 ~ 57402392 (+) True G28865
TU38502 other upstream 2489282 56337180 ~ 56399441 (+) False sipa1l1
TU38475 other upstream 2585513 56290756 ~ 56303210 (+) False LOC103033217
trnal-cag_8 other downstream 302862 59198202 ~ 59198284 (+) True trnal-cag_8
TU39407 other downstream 325192 59220532 ~ 59221036 (+) True G29382
TU39412 other downstream 332728 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other downstream 332971 59228311 ~ 59228562 (+) False LOC111194375
TU39514 other downstream 658986 59554326 ~ 59559752 (+) False atraid

Expression Profile