RNA id: XR_002649739.1


Basic Information

Item Value
RNA id XR_002649739.1
length 490
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC111191941
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63297863 ~ 63298732 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATCTAAGTTGGAGGAAGGGAAGATCGGAGTGTTGGATGCAGAACTGGCAGTCCCTTATGGATTCCTGTGCTATGGATATTCTCACCTGATAAAACATGCAGGAACAACTATGAAGAATCTGATTGACAAATCCGCTGCCCTCCAACTAAAGAGCTAATAAATCCAAACCACTGAGACATACCCACATTCAGCTCCacaataattagaataattcaTCTCTCCATGTTTGatctataatttaaaatgtatcgctgtttctgtctctctgtttctgcttGAGTGGGTGAGACAGCGAGGAGCAGTGAGTGCAGGACATCCGCTGGGCTGTTAGACTGCATAGAGAAGAGATCAGCTTGGCTGAACTTGGTGTAGGCCTGGGTGAACGTAGGTTGTTGCGGCAACTGGGGAACCATTGGAGGACTGcaagacaaaatataaaaaaagaaaacaggaaagATGGAAAAACAggaaagagtgaaaaaagaacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40658 lncRNA upstream 9729 63263950 ~ 63288134 (+) True G30335
TU40634 lncRNA upstream 147648 63149666 ~ 63150215 (+) True G30314
TU40631 lncRNA upstream 155195 63139298 ~ 63142668 (+) True G30311
TU40572 lncRNA upstream 180448 63116862 ~ 63117415 (+) True G30280
TU40501 lncRNA upstream 368137 62928802 ~ 62929726 (+) False LOC103035278
TU40763 lncRNA downstream 135099 63433831 ~ 63435982 (+) True G30383
XR_002649180.1 lncRNA downstream 167511 63466243 ~ 63468751 (+) True LOC103041812
TU40768 lncRNA downstream 167543 63466275 ~ 63468617 (+) False LOC103041812
TU40773 lncRNA downstream 228789 63527521 ~ 63550200 (+) True G30393
TU40942 lncRNA downstream 958382 64257114 ~ 64269674 (+) False kit
XM_007257027.2 mRNA upstream 2140 63290134 ~ 63295723 (+) True ociad1
XM_007257026.2 mRNA upstream 2177 63290134 ~ 63295686 (+) False ociad1
XM_007257025.3 mRNA upstream 163126 63132960 ~ 63134737 (+) True zar1
XM_022664317.1 mRNA upstream 166763 63123306 ~ 63131100 (+) True slc10a4
XM_007257020.3 mRNA upstream 186204 63087982 ~ 63111659 (+) False slain2
XM_007257028.3 mRNA downstream 9217 63307949 ~ 63314957 (+) True ociad2
XM_022664352.1 mRNA downstream 19920 63318652 ~ 63334868 (+) False dcun1d4
XM_007257029.2 mRNA downstream 20524 63319256 ~ 63334868 (+) False dcun1d4
XM_007257030.3 mRNA downstream 22823 63321555 ~ 63334868 (+) True dcun1d4
XM_022664370.1 mRNA downstream 66942 63365674 ~ 63379522 (+) False spata18
TU40444 other upstream 454820 62839235 ~ 62843043 (+) False LOC103045797
TU40175 other upstream 1361780 61926106 ~ 61936083 (+) True LOC103046322
trnad-guc_1 other upstream 1600992 61696800 ~ 61696871 (+) True trnad-guc_1
trnad-guc other upstream 1604579 61693213 ~ 61693284 (+) True trnad-guc
XR_002649037.1 other upstream 2854356 60430861 ~ 60443507 (+) True LOC111190190
TU40713 other downstream 37002 63335734 ~ 63345693 (+) True G30362
TU40718 other downstream 37002 63335734 ~ 63345693 (+) False G30362
TU40730 other downstream 37002 63335734 ~ 63345693 (+) False G30362
TU40731 other downstream 37002 63335734 ~ 63345693 (+) False G30362
TU40712 other downstream 37195 63335927 ~ 63345693 (+) False G30362

Expression Profile