RNA id: XR_002651092.1


Basic Information

Item Value
RNA id XR_002651092.1
length 460
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id LOC111194479
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 613037 ~ 615239 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCACTGGAAACTGATCCAGATCCAGGGGCAGAACCAGCTCCCACCACCCAGGAACCTGATCAATCTAATTATCAACCTCTAGAAGAACAATCTATTAAAAAAGAGCATCAGGATACACAGGAAACTGATCCCGAACCAGGGACAGAACCAGCCCTGAGCACCCAGCAAACTGCTAATACTGATAATGAACGACCAGGAAACCAATCTAGAACAAAACAGCTTGAGGATTTACAAGAAACTGATCCCGAACCAGACGAAGGACCAGCTCTGTCCACTGAGGAACCTGATCAATCTAATGATCAACCTCTAGAAGTACAACTTGTAAAAACAGAGCACCAGGATGCACCGGAAACTGATCCGAAACCTGATAAAACTGATGATCCGCCTTTAAGAGATGAACAGCAGCAGGCACCAGAAGTTGAGATTCAGCCATGTGACCATGTGATGCAGACTTTTAgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651095.1 lncRNA upstream 15307 593655 ~ 597730 (+) True LOC111194483
XR_002649636.1 lncRNA upstream 24730 583710 ~ 588307 (+) True LOC111191745
TU21158 lncRNA upstream 74750 464564 ~ 538287 (+) True G15656
TU21152 lncRNA upstream 118699 464564 ~ 494338 (+) False G15656
TU21173 lncRNA upstream 119399 493270 ~ 493638 (+) True G15660
TU21270 lncRNA downstream 70834 686073 ~ 705802 (+) True G15724
TU21302 lncRNA downstream 794694 1409933 ~ 1412569 (+) True G15748
TU21305 lncRNA downstream 799943 1415182 ~ 1420808 (+) True G15749
TU21340 lncRNA downstream 839088 1454327 ~ 1457428 (+) True G15771
TU21393 lncRNA downstream 912816 1528055 ~ 1529400 (+) False fdxacb1
XM_022667504.1 mRNA upstream 3608 600428 ~ 609429 (+) True LOC111191737
XM_022678694.1 mRNA upstream 54635 551043 ~ 558402 (+) True LOC103023152
XM_022678704.1 mRNA upstream 88899 509572 ~ 524138 (+) True LOC103028849
XM_022667468.1 mRNA upstream 118668 483139 ~ 494369 (+) True LOC107196798
XM_022678667.1 mRNA upstream 144953 448393 ~ 468084 (+) True LOC107197531
XM_022678737.1 mRNA downstream 707283 1322522 ~ 1340800 (+) True LOC103025578
XM_022678744.1 mRNA downstream 707283 1322522 ~ 1340800 (+) False LOC103025578
XM_007245217.2 mRNA downstream 822567 1437806 ~ 1442109 (+) True cryab
XM_007245220.3 mRNA downstream 842231 1457470 ~ 1469889 (+) True LOC103029064
XM_007245222.3 mRNA downstream 842231 1457470 ~ 1469889 (+) False LOC103029064
XR_002651096.1 other upstream 19404 592228 ~ 593633 (+) True LOC111194487
XR_002651100.1 other downstream 707277 1322516 ~ 1332791 (+) False LOC103025578
XR_002651098.1 other downstream 707277 1322516 ~ 1332281 (+) False LOC103025578
TU21431 other downstream 1065920 1681159 ~ 1682022 (+) True G15839
TU22663 other downstream 5557517 6172756 ~ 6177884 (+) False LOC103025913
TU22722 other downstream 5917157 6532396 ~ 6532868 (+) True G16820

Expression Profile