RNA id: XR_002651316.1


Basic Information

Item Value
RNA id XR_002651316.1
length 1507
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id LOC111194870
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8928692 ~ 8931760 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCACATGTGGTTTTACAAACCTATTGACAGCCCTATTATTTTGCCTCAGAGTGAAGCATGATTTTCCTTTCCAGGTAAAGTGTGAACAGTACTGGCCAGAGAACCGCAGTCCCAGTGCTTATGGTAACCTGATGATCAGTGTCCAATcagagcagaaaaagaaaagctggACTCTGCGAGAATTTAGTGTGAAAGATGATCAGTATGTGTTTGTGCACCAGTGCATCCTGGATTCTCTGCAGTCCAAACAGAATGGTACACCTGAGGTTGTATATGACAATCAGAACATAAATGATGCCCAAGATGAAAATGAATATTCCGATGTTCATGTAATTGAAGATAATGCAGATATCTAATTAATCCCAGATACTAATGAAAATCAAGAAATCTTTTTCTTgatttaattctattttctttttaatgtaaaatttccATTCATTGTGATGTGTTGTCCAATCTTTAAAGGTATATTAATGTACAAAATTCACTAGTAAAAAGTAAactagtaataaataaaaaaaatagtgcaacaaacaaataataaaataaactataatacTGACAAAATTTCCATCGTTTTTTTCCTAGTGGCAGCAATAAAGTGTGAATgcaaagtatatttttttaatatacactaAAATTTATCTGTATCTGTAGGCTGATCCtcaactgtaattttatagacTGCAGACATTTGTTGGGTGACACGATCACATGCTCTGGTTCATGCTTGCAAAACCATATGCTCTGTGGGTTTCATATTTTAGGAACTATTCTGTTAAAAGGAAACAACCAGTGGGTTTCGGctcatacatgcaaatacacAGTACTGCCAGCTGTTGCTGATTAACAACTTTCATGTCTCACATgtgattttaatttgatttttcaaacaattaaacaaaagtTCCTTAAAGTGAGACATGATTTCTCTCTTTTGCAACACCACTCTGATATTTATTAGGATTTgaatatattcaaaataaattaataatttgatTTTGACACATTCACTCCTGCCCTGTGGAGGTTGTTGCTTATGTCTCTTACAGttgtttaaggttttttttttacagcactcacaatgtttctgtcatcaactgctgtgttttttctttgtctacCTGTTCATCACCTGTTATTTAGTACATCAGTGACCACTTTCTTCTTTAAGACATTCCAAACAGTTGTACTGTCTATAGACAATATTTGATTTCCCATCTTCTCTCAGTTctcacagttgcttgtttttcacccacAGACAGCAaggttttcatgttggttactcctTAAGCAATAAATGCACAGATAAAACCAAAATCTGAAACCAAGcgctgtttattgtttgaatgTATCAGGGCACACCAGGGCAATAAAACACACCTGATGGTCAcatgttccagtacttttgcccacaagaaaaatgggtgaGTTCAGATAAAAAGGTGCTTCTGAACTCTGTATCCAGATGTATATAGctgaaaataaaagctgaaatgaaatatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23560 lncRNA upstream 24750 8899940 ~ 8903942 (+) False LOC111191978
TU23552 lncRNA upstream 30403 8895965 ~ 8898289 (+) False LOC111191971
TU23519 lncRNA upstream 51566 8872932 ~ 8877126 (+) False G17442
TU23578 lncRNA downstream 141734 9073494 ~ 9074499 (+) True LOC111194882
XR_002651329.1 lncRNA downstream 141808 9073568 ~ 9074488 (+) False LOC111194882
TU23581 lncRNA downstream 150328 9082088 ~ 9084442 (+) True G17474
TU23608 lncRNA downstream 271629 9203389 ~ 9215506 (+) True G17496
TU23799 lncRNA downstream 550642 9482402 ~ 9482708 (+) True G17632
XM_022668284.1 mRNA upstream 6961 8904081 ~ 8921731 (+) True LOC111191981
XM_022668275.1 mRNA upstream 24688 8902645 ~ 8904004 (+) True LOC111191978
XM_022668265.1 mRNA upstream 26438 8900225 ~ 8902254 (+) True LOC111191975
XM_022668253.1 mRNA upstream 29047 8891244 ~ 8899645 (+) True LOC111191971
XM_007239769.3 mRNA upstream 39297 8879585 ~ 8889395 (+) True LOC103030535
XM_022680054.1 mRNA downstream 924 8932684 ~ 8974038 (+) True LOC103021367
XM_022680101.1 mRNA downstream 49244 8981004 ~ 9005830 (+) False LOC103046631
XM_022680095.1 mRNA downstream 49246 8981006 ~ 9005830 (+) True LOC103046631
XM_022680097.1 mRNA downstream 49303 8981063 ~ 8986873 (+) False LOC103046631
XM_022680087.1 mRNA downstream 49308 8981068 ~ 8986873 (+) False LOC103046631
TU23546 other upstream 7036 8916586 ~ 8921656 (+) True G17443
TU23528 other upstream 7036 8917975 ~ 8921656 (+) False G17443
TU23483 other upstream 211905 8675619 ~ 8716787 (+) True G17414
trnat-ugu_6 other upstream 2260799 6667821 ~ 6667893 (+) True trnat-ugu_6
trnat-ugu_5 other upstream 2269219 6659401 ~ 6659473 (+) True trnat-ugu_5
TU23538 other downstream 947 8932707 ~ 8950159 (+) False G17443
TU23933 other downstream 1349464 10281224 ~ 10281976 (+) True G17745
TU24160 other downstream 2246148 11177908 ~ 11190080 (+) True G17904
XR_002651390.1 other downstream 2923846 11855606 ~ 11855851 (+) True LOC111194942
trnam-cau_3 other downstream 3359510 12291270 ~ 12291342 (+) True trnam-cau_3

Expression Profile