RNA id: XR_002652173.1


Basic Information

Item Value
RNA id XR_002652173.1
length 4130
lncRNA type inter_gene
GC content 0.43
exon number 6
gene id LOC111196607
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 42061924 ~ 42115521 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atatatatatatatatattatatatatatatgagactTTGAGGTGCATGCATAATCACTGTCATGCAGAACAGTACCAAAAGGTCAGCTTTTCAGTGGAGTCAGTGAAAAAGATTTCATTTGGGATCACccaatagtaaaaataataataataatattaataataataatgcatgttTGACACTATAAATATCAACTGATTAAATCCTATCAGAAAAtgaaaacaagaacaaaatagatagatacaaGGTTTACTGCATGAAAGTGGTAATATGCCACAGTAGAAAAGAAGAACACTAAAAACATGTCACATGTCCAAATAGGTTTCTTCTCCCCAATTCcatgtttacagtgtgttaGCTTACAAGGAAAGCAGGGAGAGTTTGCTGTGTCAAGGAGGACAGCAGTCTCTCTCCCTGCAGGTCACCACAGCATCAGCGTTGGCTGACGGCCAGGCCTCCACTGATAAGCAgcttctctctctgctctctctctgcatcCCCTAGAGGGCAATCATTTACCCCTTTGAATTTGCACTGCCCAGCCCCCAACCGGTACAGCACTCACTGCCTCTCCCCTCCTGCTTCAATCTCATGTGGTGACACATTAGACATGCAGCGAGAGGATCCTGCCCTGCCTCTCCCCTGCTCACTCCCCCCACACCACCCAACCCACCCCAGGCAGTGCAAGGGAACTTTTGCACCAAGATATTGAGATATAGCTTCAGATTAATTTCCACCGGCAGCGCCACACTGTGAGACGCTCATGTCGCGACTGACTGCTGAGGTGGCTAAAGATCAGCTGCTTCTGAAGGCCCGCCTGCCAGGCCCAAGTGATTTGAACAGATATACTCATACATCTGTGTGGATGTAAAAATCCTGGCTTGCGCTCATTCTATAGCCTGTGACATTTTAGCTTTCATTTGGGATATACAGTATGTGCCTGAACACATCCTCCTAACATTATATAGTCTTTGGggtctatttctcttttttatgattttactgaaatcatcaaaaaatagttgaatgtaGATTTGTAGCACTGCTAACGAGTgcattaccacacacacttatagGACCTGCGTATTCAGAGGTGTATAATAACGGGTGAAGCTTTAGCCCAGTGCCTTTTAAGAATTCTCATTGTCACATTACATGGCTCCTGCTGGACCCCTTCCCCCATCAATAATAGCCTCCTCCTCTGAGCAGTGGTGCATTACAGTAAATTAGATGGAGCTTTTATAATGGGCAAAACGGGCCCATCAGTGAGGAAAGgcagagagtgaaaaagaaagaaagaaccaaGGAGAGAAAGGGTGAGAGTGAAGCAtgagaaagaaataaatgagacagttaaaggaaaaaaaagtgtgaggaAGAGATTTAGTGAGAGGAGCATAGTGAGATAGAGTGGGAGCAAGAGAAGTGAGCATGAGAGAGCAATGATGCGAGTGAAGAAGACAAGGAGACAgacgaaaaaagaaaaagagaaacaagaagaggaggaagagaaatagtaagagagagtgactatgagagaaaagtgagaaaaaaatgaaagtagaGAAAAAAGCAGCAATAAAAGGAGcgtgagagagaaatacagtaaGATAAAGGGGAAAAGGGGGAGACAGGTAAAGGTAAAAGTGTGAatcagtgagagagacagaaagcttTGAGACACAAGGGTAAACATGAGAGTAATAAAGCtataaactctaaaataaaaaagaagacaggtAGAGAgacaacagagagaaagacagaaagaacagCAATAGAAATTGACAGGTAAGAGAAagagctaataataataataacatgaaTAAACTGAGAGGAACCCaacgagagaaaaagaaaatggtgaccatgagagagagagagagagagagagagagctccagGTGGGAATGACTCATCTCCTGGCCGACTCTTATCATCCCAAGACTGGGGGCTAATGCCCCACACCCTCCTCCCAGTCCAGCAGCACAGAAGGAAGGGATCGATAGGCAGCCCTGACTAGCCGCTATCTGATATTGAAGATGCTGGAATGTATTTCTGAATAGCCCCCAGACAGGTGTGTTCGATATGTCTTCAATCTCCTCAGCTCACAAAAGGCCAAGCTCAGATTAGGTAACTGCAGGCCTAAGCACCATGGCAGCCGCCCTCACTAATGAAATTCTTCCATTTCAGACTCACACCTCTGATTATTATTCCATTCCAGCATAGATTTCTTTGTATGTAaagttattatttgtttatttttttctttgcttttcagAGCAAACAGTGAAGAGCAAATGTAACAGTCTGAGCAGAGGCCATTCTGTATGAGTGGAGAGTCACATTCACATAAATGAGTTAACTTGCTCAACATCCTGGCCGTTGATTAGGAATGCGGCGGATAGCTTTGGTCTGAGGGGACGTGGCCTGGCTAACGGCTGCCGTTAGACGTGTGAAGTCGGAGCTCGGTTCAGTAGgCATTTCCAAGATTTCCACAGTCTCAGCAGCACAGGAATGCACTTTTAGCCAGGAGTATCTCTCTCCTTCCATTGCTTCATTTTCCCCAGTGGAAACAGCATGGCTGTGGAGAATGGATCTGATGCTTCGCAGACTCTTTAACCACCGAGGCTTGACGAGAATGTAAACAAGGTGTTCTTAACACTCTGatTGCTTGTACAATGCACCGTTTTGATCTCAGCTGTTCCTGAAGTTTAAGAGCTGAATTAGTAAGCTGTCAAGGGCTTACTCACAAATTGCTCGTAGTGACTCGAAAATTGAAGTTCTCTCTCCTCTGCAAGCCTCTTCAGAGCACTCCATCCTCAGGGCAGGCTAATTTAAAGTTAATTACCTGGTGCCTGGATAGAGAGACAGGGCCTGAGCCGGAGCACACCAAACACGTGCAGGCGGCGCGAGCAGCAAACTGCAGcagggGGATGTGGGTGGCAGTGAAGCGTCAGTCTCTGGTGAGAATTGATTTCAGTCCCCCCCCTCCCTCACCCCAGCAGCTGAAGGCTCAGGTCACATCCCAGCCTGCCCGAGCAAGATAACGCCCAGTGAAGTGAGAGCAAGTCACCTGgaactgcacaaaaaaaaaacgatgataTTGCCTCAAATTGACCAGCTCCGTTTCAGAGCtcactgtgtatttatttgcttGTGCAGGAGAAGAGAGTTTATGTGGCTAGCGCAGGTTAGTCTATGGAAGGAAATTGTGTgtctacatgttttttttttctgtctctctctctgtctctccctctctctctttctctctctctctctctctctctctctgaggcaTTCCATCTGATTATGAGTACTTTGCAATCTGCGACAGTTTGATTGATGCTCCTCCTCCATGAGCAGAATTTTGAGCAGCACCTCCTTGGAGCACCCAGTTATGCTTCTGCAAGCCCAGTAACCTTGAATTTATGTTGCCACGGCAACGAAACAGGTCATGCATTATGGATTATCATTGAAATTCTACACCACCTACCTAACATAATAATGGAGGCTTGGGACTTAATCAAATCAGCCattctctgtatgtgtgtctgtgagcgtgtatgtgtgtgtttcagtgtgtgtgtgcttcagtgtgtgtgtgtgtttgttcgtGTGTCTATATTTGGATTTGTTTTTGCATTGGAATGTGCATATGTTTGCTTGTATGTTGCATGCTCCGTCTGCATGttagtactgtatgtatgtattctGCAGCTACATCTGTGTAGATGTGAGGTGCAGtaagtctgtgcagtagagtgAGAGTACAGTGAACACAACAGGGCTGGGGACTGTTCAAAATCAAGGTGCATAAAGGCTTCTTTGGAATAGTATAATAGAAGAGTTAGTTTTGAGGTTCTTCTAAATAACCATTTTATTGGTAAAGGAGACGACGAGTGGGAAGCGCTGCTCATTCATAGACGTTCCACACCTGTCACCTCATCTGTTTACACAGCAATTGTGTTTTAATCGATTATTCTATTTTCCTGTTAAACAGACCAATATCAGTCAGCACTGGTCAATCTGAATATTCCTGCTTACTTTGtttcttttatcatttattattttttaattattatgtatttttctggAACTACATTGgcactctgatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002652170.1 lncRNA upstream 10439 42030080 ~ 42051485 (+) True LOC111196599
TU34247 lncRNA upstream 191917 41855959 ~ 41870007 (+) True G25493
TU34246 lncRNA upstream 191917 41860651 ~ 41870007 (+) False G25493
TU34241 lncRNA upstream 196315 41865251 ~ 41865609 (+) True G25492
TU34202 lncRNA upstream 326214 41734587 ~ 41735710 (+) True G25459
TU34337 lncRNA downstream 80862 42196383 ~ 42196653 (+) True G25560
TU34376 lncRNA downstream 205390 42320911 ~ 42322260 (+) True G25577
TU34412 lncRNA downstream 281481 42397002 ~ 42397298 (+) True G25602
TU34442 lncRNA downstream 388260 42503781 ~ 42505297 (+) True G25624
TU34443 lncRNA downstream 404120 42519641 ~ 42519942 (+) True G25625
XM_022685849.1 mRNA upstream 328378 41711674 ~ 41733546 (+) True kidins220
XM_022685857.1 mRNA upstream 329606 41708771 ~ 41732318 (+) False kidins220
XM_007260836.3 mRNA downstream 202002 42317523 ~ 42326404 (+) True rnaseh1
XM_022685979.1 mRNA downstream 288399 42403920 ~ 42496318 (+) True LOC103042546
XM_022685989.1 mRNA downstream 288399 42403920 ~ 42496318 (+) False LOC103042546
XM_022685982.1 mRNA downstream 288399 42403920 ~ 42496318 (+) False LOC103042546
XM_022685999.1 mRNA downstream 288399 42403920 ~ 42496318 (+) False LOC103042546
TU33591 other upstream 2236206 39819276 ~ 39825718 (+) True G24972
TU33356 other upstream 2664095 39393842 ~ 39397829 (+) False eif2b2
XR_002652014.1 other upstream 2720953 39325083 ~ 39340971 (+) True LOC111196173
TU33254 other upstream 3016143 39045170 ~ 39045781 (+) True G24719
TU33086 other upstream 3114702 38939357 ~ 38947222 (+) True G24583
TU34411 other downstream 276119 42391640 ~ 42392938 (+) True G25601
TU34410 other downstream 276124 42391645 ~ 42392938 (+) False G25601
XR_002652205.1 other downstream 382256 42497777 ~ 42516557 (+) True fgfr1op
TU34713 other downstream 1244948 43360469 ~ 43363444 (+) True rps29
TU34766 other downstream 1306250 43421771 ~ 43422046 (+) True G25879

Expression Profile