RNA id: trnam-cau_11


Basic Information

Item Value
RNA id trnam-cau_11
length 73
RNA type tRNA
GC content 0.56
exon number 1
gene id trnam-cau_11
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53631087 ~ 53631159 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCTCGTTAGCGCAGTAGGTAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGATCCTCACACGGGGca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37481 lncRNA upstream 17080 53613777 ~ 53614007 (+) True G27935
TU37469 lncRNA upstream 53889 53576776 ~ 53577198 (+) True G27923
TU37463 lncRNA upstream 95862 53534600 ~ 53535225 (+) True G27917
TU37446 lncRNA upstream 126663 53499475 ~ 53504424 (+) True G27903
TU37398 lncRNA upstream 300310 53327872 ~ 53330777 (+) True G27875
TU37508 lncRNA downstream 43429 53674588 ~ 53675007 (+) True G27962
TU37511 lncRNA downstream 56540 53687699 ~ 53689734 (+) True G27964
TU37513 lncRNA downstream 60567 53691726 ~ 53693741 (+) True G27966
TU37523 lncRNA downstream 64791 53695950 ~ 53696768 (+) True G27972
TU37538 lncRNA downstream 82606 53713765 ~ 53715952 (+) True G27984
XM_022662592.1 mRNA upstream 801803 52825184 ~ 52829284 (+) False LOC103041583
XM_022662601.1 mRNA upstream 801803 52825184 ~ 52829284 (+) False LOC103041583
XM_022662581.1 mRNA upstream 801803 52825246 ~ 52829284 (+) True LOC103041583
XM_022662588.1 mRNA upstream 801803 52825246 ~ 52829284 (+) False LOC103041583
XM_022662560.1 mRNA upstream 814593 52811053 ~ 52816494 (+) True LOC111188773
XM_022662659.1 mRNA downstream 332403 53963562 ~ 54049416 (+) False epb41l2
XM_022662654.1 mRNA downstream 332403 53963562 ~ 54049416 (+) True epb41l2
XM_022662728.1 mRNA downstream 332403 53963562 ~ 54049416 (+) False epb41l2
XM_022662663.1 mRNA downstream 332403 53963562 ~ 54049416 (+) False epb41l2
XM_022662732.1 mRNA downstream 332403 53963562 ~ 54049416 (+) False epb41l2
trnar-acg_6 other upstream 96 53630919 ~ 53630991 (+) True trnar-acg_6
trnae-uuc_8 other upstream 364 53630652 ~ 53630723 (+) True trnae-uuc_8
trnah-gug_6 other upstream 723 53630293 ~ 53630364 (+) True trnah-gug_6
trnam-cau_10 other upstream 1173 53629842 ~ 53629914 (+) True trnam-cau_10
trnar-acg_5 other upstream 1341 53629674 ~ 53629746 (+) True trnar-acg_5
trnah-gug_7 other downstream 379 53631538 ~ 53631609 (+) True trnah-gug_7
trnae-uuc_9 other downstream 738 53631897 ~ 53631968 (+) True trnae-uuc_9
trnar-acg_7 other downstream 1005 53632164 ~ 53632236 (+) True trnar-acg_7
trnam-cau_12 other downstream 1173 53632332 ~ 53632404 (+) True trnam-cau_12
trnah-gug_8 other downstream 1624 53632783 ~ 53632854 (+) True trnah-gug_8