RNA id: trnam-cau_8


Basic Information

Item Value
RNA id trnam-cau_8
length 73
RNA type tRNA
GC content 0.60
exon number 1
gene id trnam-cau_8
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53627352 ~ 53627424 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCTCGTTAGCGCAGTAGGTAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGATCCTCACACGGGGca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37481 lncRNA upstream 13345 53613777 ~ 53614007 (+) True G27935
TU37469 lncRNA upstream 50154 53576776 ~ 53577198 (+) True G27923
TU37463 lncRNA upstream 92127 53534600 ~ 53535225 (+) True G27917
TU37446 lncRNA upstream 122928 53499475 ~ 53504424 (+) True G27903
TU37398 lncRNA upstream 296575 53327872 ~ 53330777 (+) True G27875
TU37508 lncRNA downstream 47164 53674588 ~ 53675007 (+) True G27962
TU37511 lncRNA downstream 60275 53687699 ~ 53689734 (+) True G27964
TU37513 lncRNA downstream 64302 53691726 ~ 53693741 (+) True G27966
TU37523 lncRNA downstream 68526 53695950 ~ 53696768 (+) True G27972
TU37538 lncRNA downstream 86341 53713765 ~ 53715952 (+) True G27984
XM_022662592.1 mRNA upstream 798068 52825184 ~ 52829284 (+) False LOC103041583
XM_022662601.1 mRNA upstream 798068 52825184 ~ 52829284 (+) False LOC103041583
XM_022662581.1 mRNA upstream 798068 52825246 ~ 52829284 (+) True LOC103041583
XM_022662588.1 mRNA upstream 798068 52825246 ~ 52829284 (+) False LOC103041583
XM_022662560.1 mRNA upstream 810858 52811053 ~ 52816494 (+) True LOC111188773
XM_022662659.1 mRNA downstream 336138 53963562 ~ 54049416 (+) False epb41l2
XM_022662654.1 mRNA downstream 336138 53963562 ~ 54049416 (+) True epb41l2
XM_022662728.1 mRNA downstream 336138 53963562 ~ 54049416 (+) False epb41l2
XM_022662663.1 mRNA downstream 336138 53963562 ~ 54049416 (+) False epb41l2
XM_022662732.1 mRNA downstream 336138 53963562 ~ 54049416 (+) False epb41l2
trnar-acg_3 other upstream 96 53627184 ~ 53627256 (+) True trnar-acg_3
trnae-uuc_5 other upstream 364 53626917 ~ 53626988 (+) True trnae-uuc_5
trnah-gug_3 other upstream 723 53626558 ~ 53626629 (+) True trnah-gug_3
trnam-cau_7 other upstream 1173 53626107 ~ 53626179 (+) True trnam-cau_7
trnar-acg_2 other upstream 1341 53625939 ~ 53626011 (+) True trnar-acg_2
trnah-gug_4 other downstream 379 53627803 ~ 53627874 (+) True trnah-gug_4
trnae-uuc_6 other downstream 738 53628162 ~ 53628233 (+) True trnae-uuc_6
trnar-acg_4 other downstream 1005 53628429 ~ 53628501 (+) True trnar-acg_4
trnam-cau_9 other downstream 1173 53628597 ~ 53628669 (+) True trnam-cau_9
trnah-gug_5 other downstream 1624 53629048 ~ 53629119 (+) True trnah-gug_5