RNA id: trnas-aga_3


Basic Information

Item Value
RNA id trnas-aga_3
length 82
RNA type tRNA
GC content 0.54
exon number 1
gene id trnas-aga_3
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53643009 ~ 53643090 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTAGtcgtggccgagtggttaaggcgatggacTAGAAATCCATTGGGGTCTCCCcgcgcaggttcgaatcctgccGACTACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37481 lncRNA upstream 29002 53613777 ~ 53614007 (+) True G27935
TU37469 lncRNA upstream 65811 53576776 ~ 53577198 (+) True G27923
TU37463 lncRNA upstream 107784 53534600 ~ 53535225 (+) True G27917
TU37446 lncRNA upstream 138585 53499475 ~ 53504424 (+) True G27903
TU37398 lncRNA upstream 312232 53327872 ~ 53330777 (+) True G27875
TU37508 lncRNA downstream 31498 53674588 ~ 53675007 (+) True G27962
TU37511 lncRNA downstream 44609 53687699 ~ 53689734 (+) True G27964
TU37513 lncRNA downstream 48636 53691726 ~ 53693741 (+) True G27966
TU37523 lncRNA downstream 52860 53695950 ~ 53696768 (+) True G27972
TU37538 lncRNA downstream 70675 53713765 ~ 53715952 (+) True G27984
XM_022662592.1 mRNA upstream 813725 52825184 ~ 52829284 (+) False LOC103041583
XM_022662601.1 mRNA upstream 813725 52825184 ~ 52829284 (+) False LOC103041583
XM_022662581.1 mRNA upstream 813725 52825246 ~ 52829284 (+) True LOC103041583
XM_022662588.1 mRNA upstream 813725 52825246 ~ 52829284 (+) False LOC103041583
XM_022662560.1 mRNA upstream 826515 52811053 ~ 52816494 (+) True LOC111188773
XM_022662659.1 mRNA downstream 320472 53963562 ~ 54049416 (+) False epb41l2
XM_022662654.1 mRNA downstream 320472 53963562 ~ 54049416 (+) True epb41l2
XM_022662728.1 mRNA downstream 320472 53963562 ~ 54049416 (+) False epb41l2
XM_022662663.1 mRNA downstream 320472 53963562 ~ 54049416 (+) False epb41l2
XM_022662732.1 mRNA downstream 320472 53963562 ~ 54049416 (+) False epb41l2
trnas-aga_2 other upstream 197 53642731 ~ 53642812 (+) True trnas-aga_2
trnas-uga_2 other upstream 475 53642453 ~ 53642534 (+) True trnas-uga_2
trnas-uga_1 other upstream 1267 53641661 ~ 53641742 (+) True trnas-uga_1
trnas-aga_1 other upstream 2059 53640869 ~ 53640950 (+) True trnas-aga_1
trnas-uga other upstream 2337 53640591 ~ 53640672 (+) True trnas-uga
trnas-uga_3 other downstream 711 53643801 ~ 53643882 (+) True trnas-uga_3
trnas-aga_4 other downstream 989 53644079 ~ 53644160 (+) True trnas-aga_4
trnas-uga_4 other downstream 1325 53644415 ~ 53644496 (+) True trnas-uga_4
trnas-aga_5 other downstream 2117 53645207 ~ 53645288 (+) True trnas-aga_5
trnas-uga_5 other downstream 2909 53645999 ~ 53646080 (+) True trnas-uga_5