RNA id: trnas-cga_2


Basic Information

Item Value
RNA id trnas-cga_2
length 82
RNA type tRNA
GC content 0.54
exon number 1
gene id trnas-cga_2
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53647953 ~ 53648034 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTAGTtgtggccgagtggttaaggcgatggGCTCGAAATCCATTGGGGTCTCCCcgcgcaggttcgaatcctgccGACTACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37481 lncRNA upstream 33946 53613777 ~ 53614007 (+) True G27935
TU37469 lncRNA upstream 70755 53576776 ~ 53577198 (+) True G27923
TU37463 lncRNA upstream 112728 53534600 ~ 53535225 (+) True G27917
TU37446 lncRNA upstream 143529 53499475 ~ 53504424 (+) True G27903
TU37398 lncRNA upstream 317176 53327872 ~ 53330777 (+) True G27875
TU37508 lncRNA downstream 26554 53674588 ~ 53675007 (+) True G27962
TU37511 lncRNA downstream 39665 53687699 ~ 53689734 (+) True G27964
TU37513 lncRNA downstream 43692 53691726 ~ 53693741 (+) True G27966
TU37523 lncRNA downstream 47916 53695950 ~ 53696768 (+) True G27972
TU37538 lncRNA downstream 65731 53713765 ~ 53715952 (+) True G27984
XM_022662592.1 mRNA upstream 818669 52825184 ~ 52829284 (+) False LOC103041583
XM_022662601.1 mRNA upstream 818669 52825184 ~ 52829284 (+) False LOC103041583
XM_022662581.1 mRNA upstream 818669 52825246 ~ 52829284 (+) True LOC103041583
XM_022662588.1 mRNA upstream 818669 52825246 ~ 52829284 (+) False LOC103041583
XM_022662560.1 mRNA upstream 831459 52811053 ~ 52816494 (+) True LOC111188773
XM_022662659.1 mRNA downstream 315528 53963562 ~ 54049416 (+) False epb41l2
XM_022662654.1 mRNA downstream 315528 53963562 ~ 54049416 (+) True epb41l2
XM_022662728.1 mRNA downstream 315528 53963562 ~ 54049416 (+) False epb41l2
XM_022662663.1 mRNA downstream 315528 53963562 ~ 54049416 (+) False epb41l2
XM_022662732.1 mRNA downstream 315528 53963562 ~ 54049416 (+) False epb41l2
trnas-cga_1 other upstream 266 53647606 ~ 53647687 (+) True trnas-cga_1
trnas-cga other upstream 616 53647256 ~ 53647337 (+) True trnas-cga
trnas-uga_6 other upstream 1081 53646791 ~ 53646872 (+) True trnas-uga_6
trnas-uga_5 other upstream 1873 53645999 ~ 53646080 (+) True trnas-uga_5
trnas-aga_5 other upstream 2665 53645207 ~ 53645288 (+) True trnas-aga_5
trnas-cga_3 other downstream 268 53648302 ~ 53648383 (+) True trnas-cga_3
trnas-uga_7 other downstream 454 53648488 ~ 53648569 (+) True trnas-uga_7
trnal-cag_1 other downstream 644 53648678 ~ 53648760 (+) True trnal-cag_1
trnal-cag_2 other downstream 1020 53649054 ~ 53649136 (+) True trnal-cag_2
trnas-cga_4 other downstream 1555 53649589 ~ 53649670 (+) True trnas-cga_4