RNA id: trnas-cga_5



Basic Information


Item Value
RNA id trnas-cga_5
length 82
RNA type tRNA
GC content 0.64
exon number 1
gene id trnas-cga_5
representative True

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53649774 ~ 53649855 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GTAGTtgtggccgagtggttaaggcgatggacTCGAAATCCATTGGGGTCTCCCcgcgcaggttcgaatcctgccGACTACG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU37481 lncRNA upstream 35767 53613777 ~ 53614007 (+) True G27935
TU37469 lncRNA upstream 72576 53576776 ~ 53577198 (+) True G27923
TU37463 lncRNA upstream 114549 53534600 ~ 53535225 (+) True G27917
TU37446 lncRNA upstream 145350 53499475 ~ 53504424 (+) True G27903
TU37398 lncRNA upstream 318997 53327872 ~ 53330777 (+) True G27875
TU37508 lncRNA downstream 24733 53674588 ~ 53675007 (+) True G27962
TU37511 lncRNA downstream 37844 53687699 ~ 53689734 (+) True G27964
TU37513 lncRNA downstream 41871 53691726 ~ 53693741 (+) True G27966
TU37523 lncRNA downstream 46095 53695950 ~ 53696768 (+) True G27972
TU37538 lncRNA downstream 63910 53713765 ~ 53715952 (+) True G27984
XM_022662592.1 mRNA upstream 820490 52825184 ~ 52829284 (+) False LOC103041583
XM_022662601.1 mRNA upstream 820490 52825184 ~ 52829284 (+) False LOC103041583
XM_022662581.1 mRNA upstream 820490 52825246 ~ 52829284 (+) True LOC103041583
XM_022662588.1 mRNA upstream 820490 52825246 ~ 52829284 (+) False LOC103041583
XM_022662560.1 mRNA upstream 833280 52811053 ~ 52816494 (+) True LOC111188773
XM_022662659.1 mRNA downstream 313707 53963562 ~ 54049416 (+) False epb41l2
XM_022662654.1 mRNA downstream 313707 53963562 ~ 54049416 (+) True epb41l2
XM_022662728.1 mRNA downstream 313707 53963562 ~ 54049416 (+) False epb41l2
XM_022662663.1 mRNA downstream 313707 53963562 ~ 54049416 (+) False epb41l2
XM_022662732.1 mRNA downstream 313707 53963562 ~ 54049416 (+) False epb41l2
trnas-cga_4 other upstream 104 53649589 ~ 53649670 (+) True trnas-cga_4
trnal-cag_2 other upstream 638 53649054 ~ 53649136 (+) True trnal-cag_2
trnal-cag_1 other upstream 1014 53648678 ~ 53648760 (+) True trnal-cag_1
trnas-uga_7 other upstream 1205 53648488 ~ 53648569 (+) True trnas-uga_7
trnas-cga_3 other upstream 1391 53648302 ~ 53648383 (+) True trnas-cga_3
trnal-cag_3 other downstream 108 53649963 ~ 53650045 (+) True trnal-cag_3
trnal-cag_4 other downstream 483 53650338 ~ 53650420 (+) True trnal-cag_4
trnal-cag_5 other downstream 858 53650713 ~ 53650795 (+) True trnal-cag_5
trnas-uga_8 other downstream 1025 53650880 ~ 53650961 (+) True trnas-uga_8
trnas-aga_6 other downstream 1211 53651066 ~ 53651147 (+) True trnas-aga_6