RNA id: trnas-uga_5


Basic Information

Item Value
RNA id trnas-uga_5
length 82
RNA type tRNA
GC content 0.59
exon number 1
gene id trnas-uga_5
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53645999 ~ 53646080 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTAGtcgtggccgagtggttaaggcgatggacTTGAAATCCATTGGGGTTTCCCCGCGCAGGTTCGAACCCTGCCGACTACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37481 lncRNA upstream 31992 53613777 ~ 53614007 (+) True G27935
TU37469 lncRNA upstream 68801 53576776 ~ 53577198 (+) True G27923
TU37463 lncRNA upstream 110774 53534600 ~ 53535225 (+) True G27917
TU37446 lncRNA upstream 141575 53499475 ~ 53504424 (+) True G27903
TU37398 lncRNA upstream 315222 53327872 ~ 53330777 (+) True G27875
TU37508 lncRNA downstream 28508 53674588 ~ 53675007 (+) True G27962
TU37511 lncRNA downstream 41619 53687699 ~ 53689734 (+) True G27964
TU37513 lncRNA downstream 45646 53691726 ~ 53693741 (+) True G27966
TU37523 lncRNA downstream 49870 53695950 ~ 53696768 (+) True G27972
TU37538 lncRNA downstream 67685 53713765 ~ 53715952 (+) True G27984
XM_022662592.1 mRNA upstream 816715 52825184 ~ 52829284 (+) False LOC103041583
XM_022662601.1 mRNA upstream 816715 52825184 ~ 52829284 (+) False LOC103041583
XM_022662581.1 mRNA upstream 816715 52825246 ~ 52829284 (+) True LOC103041583
XM_022662588.1 mRNA upstream 816715 52825246 ~ 52829284 (+) False LOC103041583
XM_022662560.1 mRNA upstream 829505 52811053 ~ 52816494 (+) True LOC111188773
XM_022662659.1 mRNA downstream 317482 53963562 ~ 54049416 (+) False epb41l2
XM_022662654.1 mRNA downstream 317482 53963562 ~ 54049416 (+) True epb41l2
XM_022662728.1 mRNA downstream 317482 53963562 ~ 54049416 (+) False epb41l2
XM_022662663.1 mRNA downstream 317482 53963562 ~ 54049416 (+) False epb41l2
XM_022662732.1 mRNA downstream 317482 53963562 ~ 54049416 (+) False epb41l2
trnas-aga_5 other upstream 711 53645207 ~ 53645288 (+) True trnas-aga_5
trnas-uga_4 other upstream 1503 53644415 ~ 53644496 (+) True trnas-uga_4
trnas-aga_4 other upstream 1839 53644079 ~ 53644160 (+) True trnas-aga_4
trnas-uga_3 other upstream 2117 53643801 ~ 53643882 (+) True trnas-uga_3
trnas-aga_3 other upstream 2909 53643009 ~ 53643090 (+) True trnas-aga_3
trnas-uga_6 other downstream 711 53646791 ~ 53646872 (+) True trnas-uga_6
trnas-cga other downstream 1176 53647256 ~ 53647337 (+) True trnas-cga
trnas-cga_1 other downstream 1526 53647606 ~ 53647687 (+) True trnas-cga_1
trnas-cga_2 other downstream 1873 53647953 ~ 53648034 (+) True trnas-cga_2
trnas-cga_3 other downstream 2222 53648302 ~ 53648383 (+) True trnas-cga_3