RNA id: trnat-ugu_14



Basic Information


Item Value
RNA id trnat-ugu_14
length 73
RNA type tRNA
GC content 0.56
exon number 1
gene id trnat-ugu_14
representative True

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6926022 ~ 6926094 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GGCTCCATAGCTCAGAGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGCGAGTTCAATTCTCGCTGGGGCCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU22904 lncRNA downstream 7365 6918196 ~ 6918657 (-) True G16965
TU22901 lncRNA downstream 26542 6899211 ~ 6899480 (-) True G16962
TU22889 lncRNA downstream 142791 6775573 ~ 6783231 (-) True G16951
TU22875 lncRNA downstream 253266 6670069 ~ 6672756 (-) False G16939
TU23065 lncRNA upstream 70304 6996398 ~ 7001156 (-) True G17086
TU23073 lncRNA upstream 85909 7012003 ~ 7015844 (-) True G17093
TU23102 lncRNA upstream 222483 7148577 ~ 7155902 (-) True G17117
TU23106 lncRNA upstream 260099 7186193 ~ 7186801 (-) True G17121
TU23107 lncRNA upstream 260771 7186865 ~ 7187855 (-) True G17122
XM_022679618.1 mRNA downstream 29202 6675076 ~ 6896820 (-) True galnt1
XM_022679620.1 mRNA downstream 29202 6679799 ~ 6896820 (-) False galnt1
XM_015604595.2 mRNA downstream 381747 6534859 ~ 6544275 (-) True sec61b
XM_022679574.1 mRNA downstream 514601 6373166 ~ 6411421 (-) False nr4a3
XM_007229456.3 mRNA downstream 514639 6368118 ~ 6411383 (-) False nr4a3
XM_022679643.1 mRNA upstream 91863 7017957 ~ 7046918 (-) True cdh17
XM_007236504.2 mRNA upstream 131338 7057432 ~ 7065913 (-) True LOC103045397
XM_007236506.3 mRNA upstream 149709 7075803 ~ 7099361 (-) False rad54b
XM_015602248.2 mRNA upstream 149709 7075803 ~ 7098230 (-) True rad54b
XM_007236505.3 mRNA upstream 163486 7089580 ~ 7093507 (-) True fsbp
trnat-ugu_13 other downstream 107 6925843 ~ 6925915 (-) True trnat-ugu_13
trnat-ugu_12 other downstream 286 6925664 ~ 6925736 (-) True trnat-ugu_12
trnat-ugu_11 other downstream 822 6925128 ~ 6925200 (-) True trnat-ugu_11
trnat-ugu_10 other downstream 2351 6923599 ~ 6923671 (-) True trnat-ugu_10
trnat-ugu_9 other downstream 2529 6923421 ~ 6923493 (-) True trnat-ugu_9
trnat-ugu_15 other upstream 105 6926199 ~ 6926271 (-) True trnat-ugu_15
trnat-ugu_16 other upstream 281 6926375 ~ 6926447 (-) True trnat-ugu_16
trnat-ugu_17 other upstream 457 6926551 ~ 6926623 (-) True trnat-ugu_17
trnat-ugu_18 other upstream 635 6926729 ~ 6926800 (-) True trnat-ugu_18
trnat-ugu_19 other upstream 1508 6927602 ~ 6927674 (-) True trnat-ugu_19