RNA id: trnat-ugu_6


Basic Information

Item Value
RNA id trnat-ugu_6
length 73
RNA type tRNA
GC content 0.56
exon number 1
gene id trnat-ugu_6
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6667821 ~ 6667893 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggctccatagctcagtggttagagcactggtcttgtaaaccaggggtcgcgagttcaattctcgctggggcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22712 lncRNA upstream 21824 6643184 ~ 6645997 (+) True G16811
TU22716 lncRNA upstream 24744 6605267 ~ 6643077 (+) True G16815
TU22733 lncRNA upstream 90516 6576991 ~ 6577305 (+) True G16831
TU22731 lncRNA upstream 92596 6574946 ~ 6575225 (+) True G16829
TU22730 lncRNA upstream 93045 6574537 ~ 6574776 (+) True G16828
TU22740 lncRNA downstream 6822 6674715 ~ 6684107 (+) True G16838
TU22742 lncRNA downstream 21827 6689720 ~ 6800136 (+) True G16839
TU22749 lncRNA downstream 233329 6901222 ~ 6901911 (+) True G16845
TU22912 lncRNA downstream 258878 6926771 ~ 6927019 (+) True G16968
TU22916 lncRNA downstream 280177 6948070 ~ 7049298 (+) True G16969
XM_007229460.3 mRNA upstream 25886 6606985 ~ 6641935 (+) True tmem245
XM_015604598.2 mRNA upstream 25886 6606986 ~ 6641935 (+) False tmem245
XM_007229461.3 mRNA upstream 63946 6593467 ~ 6603875 (+) True frrs1l
XM_007229458.3 mRNA upstream 115820 6544275 ~ 6552001 (+) True alg2
XM_022679550.1 mRNA upstream 343926 6293072 ~ 6323895 (+) True erp44
XM_007229462.3 mRNA downstream 250165 6918058 ~ 6922362 (+) False ino80c
XM_022679630.1 mRNA downstream 250165 6918058 ~ 6921842 (+) True ino80c
XM_007236503.3 mRNA downstream 324010 6991903 ~ 7001192 (+) False pdp1
XM_022679639.1 mRNA downstream 324059 6991952 ~ 7001192 (+) False pdp1
XM_015602247.2 mRNA downstream 324096 6991989 ~ 7001192 (+) True pdp1
trnat-ugu_5 other upstream 8348 6659401 ~ 6659473 (+) True trnat-ugu_5
trnat-ugu_4 other upstream 11193 6656556 ~ 6656628 (+) True trnat-ugu_4
trnat-ugu_3 other upstream 12876 6654873 ~ 6654945 (+) True trnat-ugu_3
trnat-ugu_2 other upstream 14165 6653584 ~ 6653656 (+) True trnat-ugu_2
trnat-ugu_1 other upstream 15769 6651980 ~ 6652052 (+) True trnat-ugu_1
TU23483 other downstream 2007726 8675619 ~ 8716787 (+) True G17414
TU23546 other downstream 2248693 8916586 ~ 8921656 (+) True G17443
TU23528 other downstream 2250082 8917975 ~ 8921656 (+) False G17443
TU23538 other downstream 2264814 8932707 ~ 8950159 (+) False G17443
TU23933 other downstream 3613331 10281224 ~ 10281976 (+) True G17745

Expression Profile