RNA id: TU82274


Basic Information

Item Value
RNA id TU82274
length 222
lncRNA type inter_gene
GC content 0.25
exon number 1
gene id G61011
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 800649 ~ 800870 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gctgagcatttacaaaatgtaaagggacttaaaaataagttttaaatgaGAAAAGCAAGCTAACAATATacgatttaattaagaagaaataaaatcattcagaataaaaggatatgcagacaggctaaaatgtaaagcaataaaacaaagagacaaataattagaataataaaatataaacacaattaaagaagTAAAGGACTAAAAGAACGcgacaattat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82253 lncRNA upstream 59751 740691 ~ 740898 (+) True G60996
TU82239 lncRNA upstream 177214 616774 ~ 623435 (+) True G60983
TU82185 lncRNA upstream 242069 555151 ~ 558580 (+) False LOC103023024
TU82130 lncRNA upstream 329960 455836 ~ 470689 (+) True G60910
TU82123 lncRNA upstream 523327 277010 ~ 277322 (+) True G60903
TU82283 lncRNA downstream 5695 806565 ~ 807029 (+) False G61014
TU82293 lncRNA downstream 6527 807397 ~ 809972 (+) False G61014
TU82305 lncRNA downstream 8007 808877 ~ 809972 (+) False G61014
TU82328 lncRNA downstream 33117 833987 ~ 835273 (+) True G61016
TU82335 lncRNA downstream 40725 841595 ~ 949084 (+) True G61023
XM_015603384.2 mRNA upstream 19852 749881 ~ 780797 (+) True syt10
XM_022671204.1 mRNA upstream 19852 749881 ~ 780797 (+) False syt10
XM_022671203.1 mRNA upstream 19852 749881 ~ 780797 (+) False syt10
XM_007240405.3 mRNA upstream 19852 749881 ~ 780797 (+) False syt10
XM_007236107.3 mRNA upstream 178907 614113 ~ 621742 (+) True LOC103021355
XM_022671158.1 mRNA downstream 8364 809234 ~ 809997 (+) True LOC111192892
XM_022671159.1 mRNA downstream 92499 893369 ~ 912312 (+) True LOC111192895
XM_022671160.1 mRNA downstream 112021 912891 ~ 914305 (+) True LOC111192896
XM_022671162.1 mRNA downstream 118304 919174 ~ 927544 (+) True LOC111192897
XM_022671163.1 mRNA downstream 128740 929610 ~ 943921 (+) True LOC111192898
TU82226 other upstream 175640 599683 ~ 625009 (+) False LOC103045537
XR_001518568.2 other upstream 199500 599659 ~ 601149 (+) True LOC103045537
TU82081 other upstream 653966 144246 ~ 146683 (+) False mrps33
XR_002650173.1 other downstream 40167 841037 ~ 844690 (+) True LOC111192924
TU82289 other downstream 108892 909762 ~ 1014461 (+) True G61014
TU82298 other downstream 186888 987758 ~ 1013716 (+) False G61014
TU82286 other downstream 187426 988296 ~ 1014461 (+) False G61014
TU82277 other downstream 226927 1027797 ~ 1043316 (+) True G61013

Expression Profile