RNA id: TU82277


Basic Information

Item Value
RNA id TU82277
length 464
RNA type TUCP
GC content 0.53
exon number 4
gene id G61013
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 853526 ~ 1043316 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAGAGAGCTGGgtcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggaggttctgggagcagctgcttttggtagagtggagggtcaggtgtggtcagaggagcttcagtgtagaggaaacgaatctcagattcacttctgtccaaaatcatcttcactcaaacacaactgctcccatgataatgatgtgggactggtgtgtgcagGAGTCCGACTGGTTGGAGGTTCTCACTgctctgggagagtggaggttcttcatggaGAGACCTGGttcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggaggttctgggagcagctgcttttggtagaggggagggtcaggtgtggtcagAGGAGCTTCAGTGTAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82325 lncRNA upstream 75312 845694 ~ 952485 (+) True LOC103039262
TU82327 lncRNA upstream 75312 845694 ~ 952485 (+) False LOC103039262
TU82335 lncRNA upstream 78713 841595 ~ 949084 (+) True G61023
XR_002650176.1 lncRNA upstream 110985 914900 ~ 916812 (+) True LOC111192927
TU82279 lncRNA upstream 165555 853526 ~ 862242 (+) False G61013
XR_002650172.1 lncRNA downstream 4481 1047797 ~ 1049056 (+) True LOC111192923
XR_002650146.1 lncRNA downstream 6814 1050130 ~ 1051090 (+) True LOC111192863
TU82422 lncRNA downstream 434841 1478157 ~ 1480898 (+) False LOC103024246
TU82423 lncRNA downstream 435841 1479157 ~ 1481418 (+) False LOC103024246
TU82430 lncRNA downstream 462027 1505343 ~ 1505817 (+) True G61085
XM_022671164.1 mRNA upstream 19970 1000887 ~ 1007827 (+) True LOC111192900
XM_022671163.1 mRNA upstream 83876 929610 ~ 943921 (+) True LOC111192898
XM_022671162.1 mRNA upstream 100253 919174 ~ 927544 (+) True LOC111192897
XM_022671160.1 mRNA upstream 113492 912891 ~ 914305 (+) True LOC111192896
XM_022671159.1 mRNA upstream 115485 893369 ~ 912312 (+) True LOC111192895
XM_022671165.1 mRNA downstream 353882 1397198 ~ 1404499 (+) True cracr2a
XM_022671207.1 mRNA downstream 402319 1445635 ~ 1477258 (+) False LOC103024246
XM_022671208.1 mRNA downstream 402319 1445635 ~ 1477258 (+) False LOC103024246
XM_022671209.1 mRNA downstream 402320 1445636 ~ 1480910 (+) True LOC103024246
XM_007252404.3 mRNA downstream 587557 1630873 ~ 1693966 (+) True LOC103023715
TU82289 other upstream 13336 909762 ~ 1014461 (+) True G61014
TU82286 other upstream 13336 988296 ~ 1014461 (+) False G61014
TU82298 other upstream 14081 987758 ~ 1013716 (+) False G61014
XR_002650173.1 other upstream 183107 841037 ~ 844690 (+) True LOC111192924
TU82226 other upstream 402788 599683 ~ 625009 (+) False LOC103045537
TU82516 other downstream 747183 1790499 ~ 1808930 (+) False LOC103031096
TU82507 other downstream 748236 1791552 ~ 1807151 (+) False LOC103031096
TU82508 other downstream 748236 1791552 ~ 1808930 (+) False LOC103031096
TU82513 other downstream 748236 1791552 ~ 1808930 (+) False LOC103031096
trnay-gua_2 other downstream 769455 1812771 ~ 1812858 (+) True trnay-gua_2

Expression Profile