RNA id: TU82279


Basic Information

Item Value
RNA id TU82279
length 350
lncRNA type inter_gene
GC content 0.53
exon number 3
gene id G61013
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 853526 ~ 1043316 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGttctgggagagtggaggttcttcaaGGAGAGAGCTGGgtcacagtgtgtgatgctgactttaaccagcagggtgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggaggttctgggagcagctgcttttggtagaggggagggtcaggtgtggtcagaggagcttcagtgtagaggaaacgaatctcagattcacttctgtccaaaatcatcttcactcaaacacaactgcTCCCATGATAATGATGTGGGGCTGGTGTGTGCAGACAGTGTGAGGTTGGTGGATGGTGGAAGTCGCtgtgctgggagagtggaggttcttcatagAGGACAGTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650171.1 lncRNA upstream 7013 845633 ~ 846513 (+) False LOC103039262
TU82328 lncRNA upstream 18253 833987 ~ 835273 (+) True G61016
TU82293 lncRNA upstream 43554 807397 ~ 809972 (+) False G61014
TU82305 lncRNA upstream 43554 808877 ~ 809972 (+) False G61014
TU82283 lncRNA upstream 46497 806565 ~ 807029 (+) False G61014
XR_002650176.1 lncRNA downstream 52658 914900 ~ 916812 (+) True LOC111192927
TU82295 lncRNA downstream 128571 990813 ~ 1049056 (+) False G61014
TU82312 lncRNA downstream 128571 990813 ~ 1047326 (+) False G61014
XR_002650172.1 lncRNA downstream 185555 1047797 ~ 1049056 (+) True LOC111192923
XR_002650146.1 lncRNA downstream 187888 1050130 ~ 1051090 (+) True LOC111192863
XM_022671158.1 mRNA upstream 43529 809234 ~ 809997 (+) True LOC111192892
XM_015603384.2 mRNA upstream 72729 749881 ~ 780797 (+) True syt10
XM_022671159.1 mRNA downstream 31127 893369 ~ 912312 (+) True LOC111192895
XM_022671160.1 mRNA downstream 50649 912891 ~ 914305 (+) True LOC111192896
XM_022671162.1 mRNA downstream 56932 919174 ~ 927544 (+) True LOC111192897
XM_022671163.1 mRNA downstream 67368 929610 ~ 943921 (+) True LOC111192898
XM_022671164.1 mRNA downstream 138645 1000887 ~ 1007827 (+) True LOC111192900
XR_002650173.1 other upstream 8836 841037 ~ 844690 (+) True LOC111192924
TU82226 other upstream 228517 599683 ~ 625009 (+) False LOC103045537
XR_001518568.2 other upstream 252377 599659 ~ 601149 (+) True LOC103045537
TU82081 other upstream 706843 144246 ~ 146683 (+) False mrps33
TU82289 other downstream 47520 909762 ~ 1014461 (+) True G61014
TU82298 other downstream 125516 987758 ~ 1013716 (+) False G61014
TU82286 other downstream 126054 988296 ~ 1014461 (+) False G61014
TU82277 other downstream 165555 1027797 ~ 1043316 (+) True G61013
TU82516 other downstream 928257 1790499 ~ 1808930 (+) False LOC103031096

Expression Profile