RNA id: TU82280


Basic Information

Item Value
RNA id TU82280
length 283
lncRNA type read_through
GC content 0.51
exon number 3
gene id G61013
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 853526 ~ 1043316 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGttctgggagagtggaggttcttcaaGGAGAGAGCTGGgtcacagtgtgtgatgctgactttaaccagcagggtgcagagGTTGTGTGgtgagagctgggctgtggttctcttgtggaggttctgggagcagctgcttttggtagagtggagggtcaggtgtggtcagaggagcttcagtgtagaggaaacgaatctcagattcacttctgtccaaaatcatcttcactcaaacacaactgctcccatgataatgatgtgggactggtgtgtgcaggtaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650171.1 lncRNA upstream 7013 845633 ~ 846513 (+) False LOC103039262
TU82328 lncRNA upstream 18253 833987 ~ 835273 (+) True G61016
TU82293 lncRNA upstream 43554 807397 ~ 809972 (+) False G61014
TU82305 lncRNA upstream 43554 808877 ~ 809972 (+) False G61014
TU82283 lncRNA upstream 46497 806565 ~ 807029 (+) False G61014
XR_002650172.1 lncRNA downstream 14392 1047797 ~ 1049056 (+) True LOC111192923
XR_002650146.1 lncRNA downstream 16725 1050130 ~ 1051090 (+) True LOC111192863
TU82422 lncRNA downstream 444752 1478157 ~ 1480898 (+) False LOC103024246
TU82423 lncRNA downstream 445752 1479157 ~ 1481418 (+) False LOC103024246
TU82430 lncRNA downstream 471938 1505343 ~ 1505817 (+) True G61085
XM_022671158.1 mRNA upstream 43529 809234 ~ 809997 (+) True LOC111192892
XM_015603384.2 mRNA upstream 72729 749881 ~ 780797 (+) True syt10
XM_022671165.1 mRNA downstream 363793 1397198 ~ 1404499 (+) True cracr2a
XM_022671207.1 mRNA downstream 412230 1445635 ~ 1477258 (+) False LOC103024246
XM_022671208.1 mRNA downstream 412230 1445635 ~ 1477258 (+) False LOC103024246
XM_022671209.1 mRNA downstream 412231 1445636 ~ 1480910 (+) True LOC103024246
XM_007252404.3 mRNA downstream 597468 1630873 ~ 1693966 (+) True LOC103023715
XR_002650173.1 other upstream 8836 841037 ~ 844690 (+) True LOC111192924
TU82226 other upstream 228517 599683 ~ 625009 (+) False LOC103045537
XR_001518568.2 other upstream 252377 599659 ~ 601149 (+) True LOC103045537
TU82081 other upstream 706843 144246 ~ 146683 (+) False mrps33
TU82516 other downstream 757094 1790499 ~ 1808930 (+) False LOC103031096
TU82507 other downstream 758147 1791552 ~ 1807151 (+) False LOC103031096
TU82508 other downstream 758147 1791552 ~ 1808930 (+) False LOC103031096
TU82513 other downstream 758147 1791552 ~ 1808930 (+) False LOC103031096
trnay-gua_2 other downstream 779366 1812771 ~ 1812858 (+) True trnay-gua_2

Expression Profile