RNA id: XR_002650171.1


Basic Information

Item Value
RNA id XR_002650171.1
length 451
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id LOC103039262
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 845633 ~ 952485 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGAAAATAAGAAAcccaaaaaattacaatagcagataaataaaaatgctatgaACTACAGATATTAATCAAATAATCTTCTTTAAatatctgtgtttttaatttagagGATGCAATAGAAAATTATGATGATGTCATCAGTGGTGATCAGAAGTCTGAAGCTGATGTAACAGAAGGCGTGTCAGATAACTATGATGATGCTGTTCCCACTGAACCAAACTCCACCATTATGACCATGGATGCACCAGAGGACTATGATGATGCTGTCGCTGCTGAAGAGGATAAAGGAGGGGTAAAAGATTATGAAGATGTGGAGGAGGAGCCTCAGACAGAGATGAATCAtgtgactgagagaccacaccCACTGTCTTTTCTCAGTAAATTAAAATCCAACCTCTTAAGGCACAACAAATAACTGATCATACTACCAATATTACCAATGTTTTGCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82328 lncRNA upstream 10360 833987 ~ 835273 (+) True G61016
TU82293 lncRNA upstream 35661 807397 ~ 809972 (+) False G61014
TU82305 lncRNA upstream 35661 808877 ~ 809972 (+) False G61014
TU82283 lncRNA upstream 38604 806565 ~ 807029 (+) False G61014
TU82274 lncRNA upstream 44763 800649 ~ 800870 (+) True G61011
TU82279 lncRNA downstream 7013 853526 ~ 862242 (+) False G61013
TU82280 lncRNA downstream 7013 853526 ~ 1033405 (+) False G61013
XR_002650177.1 lncRNA downstream 7198 853711 ~ 858509 (+) True LOC111192928
XR_002650176.1 lncRNA downstream 68387 914900 ~ 916812 (+) True LOC111192927
TU82295 lncRNA downstream 144300 990813 ~ 1049056 (+) False G61014
XM_022671158.1 mRNA upstream 35636 809234 ~ 809997 (+) True LOC111192892
XM_015603384.2 mRNA upstream 64836 749881 ~ 780797 (+) True syt10
XM_022671159.1 mRNA downstream 46856 893369 ~ 912312 (+) True LOC111192895
XM_022671160.1 mRNA downstream 66378 912891 ~ 914305 (+) True LOC111192896
XM_022671162.1 mRNA downstream 72661 919174 ~ 927544 (+) True LOC111192897
XM_022671163.1 mRNA downstream 83097 929610 ~ 943921 (+) True LOC111192898
XM_022671164.1 mRNA downstream 154374 1000887 ~ 1007827 (+) True LOC111192900
XR_002650173.1 other upstream 943 841037 ~ 844690 (+) True LOC111192924
TU82226 other upstream 220624 599683 ~ 625009 (+) False LOC103045537
XR_001518568.2 other upstream 244484 599659 ~ 601149 (+) True LOC103045537
TU82081 other upstream 698950 144246 ~ 146683 (+) False mrps33
TU82289 other downstream 63249 909762 ~ 1014461 (+) True G61014
TU82298 other downstream 141245 987758 ~ 1013716 (+) False G61014
TU82286 other downstream 141783 988296 ~ 1014461 (+) False G61014
TU82277 other downstream 181284 1027797 ~ 1043316 (+) True G61013
TU82516 other downstream 943986 1790499 ~ 1808930 (+) False LOC103031096

Expression Profile