RNA id: TU82328


Basic Information

Item Value
RNA id TU82328
length 391
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G61016
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 833987 ~ 835273 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATACTGCACTTCCCATGATTTAGATGCTGGAGTCACCTGTTCAGgagaaaaacccAGACTTGCTGATGGTCCTCATTTGTGCTCTGGGAGACTTGAGGTGATGCTTAACAATAACTGGATCACAGTGTGCAATGCTGaccagcaggatgcagaggttgtgtgtcgagagctgagctgtggttctcctgtggaggttctgggagcagctgcttttggtagaggggagggtcaggtgtggtcagAGGAGCTTCAGTGTAGAGGCAACGAATCTCGAATTTACTTCTGTCcaaaatcatcttcactcaaacacaactgcTCCATGATAATGATACAGGATAATATGTTCGGGTAAAGTATTAAACTTAAATCATTGTAAAGAGCAATACTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82293 lncRNA upstream 24015 807397 ~ 809972 (+) False G61014
TU82305 lncRNA upstream 24015 808877 ~ 809972 (+) False G61014
TU82283 lncRNA upstream 26958 806565 ~ 807029 (+) False G61014
TU82274 lncRNA upstream 33117 800649 ~ 800870 (+) True G61011
TU82253 lncRNA upstream 93089 740691 ~ 740898 (+) True G60996
TU82335 lncRNA downstream 6322 841595 ~ 949084 (+) True G61023
XR_002650171.1 lncRNA downstream 10360 845633 ~ 846513 (+) False LOC103039262
TU82325 lncRNA downstream 10421 845694 ~ 952485 (+) True LOC103039262
TU82327 lncRNA downstream 10421 845694 ~ 952485 (+) False LOC103039262
TU82279 lncRNA downstream 18253 853526 ~ 862242 (+) False G61013
XM_022671158.1 mRNA upstream 23990 809234 ~ 809997 (+) True LOC111192892
XM_015603384.2 mRNA upstream 53190 749881 ~ 780797 (+) True syt10
XM_022671204.1 mRNA upstream 53190 749881 ~ 780797 (+) False syt10
XM_022671203.1 mRNA upstream 53190 749881 ~ 780797 (+) False syt10
XM_007240405.3 mRNA upstream 53190 749881 ~ 780797 (+) False syt10
XM_022671159.1 mRNA downstream 58096 893369 ~ 912312 (+) True LOC111192895
XM_022671160.1 mRNA downstream 77618 912891 ~ 914305 (+) True LOC111192896
XM_022671162.1 mRNA downstream 83901 919174 ~ 927544 (+) True LOC111192897
XM_022671163.1 mRNA downstream 94337 929610 ~ 943921 (+) True LOC111192898
XM_022671164.1 mRNA downstream 165614 1000887 ~ 1007827 (+) True LOC111192900
TU82226 other upstream 208978 599683 ~ 625009 (+) False LOC103045537
XR_001518568.2 other upstream 232838 599659 ~ 601149 (+) True LOC103045537
TU82081 other upstream 687304 144246 ~ 146683 (+) False mrps33
XR_002650173.1 other downstream 5764 841037 ~ 844690 (+) True LOC111192924
TU82289 other downstream 74489 909762 ~ 1014461 (+) True G61014
TU82298 other downstream 152485 987758 ~ 1013716 (+) False G61014
TU82286 other downstream 153023 988296 ~ 1014461 (+) False G61014
TU82277 other downstream 192524 1027797 ~ 1043316 (+) True G61013

Expression Profile