RNA id: TU82422


Basic Information

Item Value
RNA id TU82422
length 2742
lncRNA type sense_over
GC content 0.35
exon number 1
gene id LOC103024246
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 1445635 ~ 1481418 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTCGACTTCTTTACATCTGTTACAGGGTTATATTTTCCAAAAACAGTtcttatattgcaatattaaaagaCATACAGGGGTTTTATGATCTCCCATTTTAAATTGATAGCCTTTATAAATATGGATGGAGTTGGTTCCCTCTTTGAAGCATCAACAAGAGAAATGAAAGGATTGGATCAGACCAAATCCCTACCTCTTGTTTTAAGTGTAAGCCTTcctcttggaacagagttatGACAGGGGAAGGGGTGAAGAACCCAATCCAGATATAGCTGTAGCAATGTAGCGCTAAGGTTAAGCAAGCTTCAGAAAAGAGGGCAGgtgttgcattatttaaggtggaaaggggaaagtaatttagctagctagctactaatCTGAActgtttttatgcttgttatgaaagAAATGGTGATAAACAATTGAAGCTACACCTTAAACTGTGATAATATAGTGgttatcatcatttttaacaaggaaaataattacatttgtgggtttctttggtcgcttgtgccagtgccatcttgccagtgattctcatatccCTTTATTTTGGCTGCGTGGGTGATGTAGCCCTGACCTACCcttccagcctaacaagaatccaGACTCCCTACTCCTAGGTGTGCACGCCCAAAACAGAGGAATAGGGCTTAGTGGTGGTAGGGCCAGGGGTTGAAATGGGATTTGGCCGTTGTTATAAGTGATTTATTTAATCTTGCAGTTTGGTAGTTGTCACTATATTAGCTACTTCCATTACTTATTAGCtgcattagctttagctccaATGCAAAACTACAGAAGCAAACTTTAGATGCCAAACATGTTTTGACCACGTTGCCAAACTATATCTATAATAAGTGAATACTACTGTTCTTTATGCACACTTGTGGCAGCCATAAAGTGGTCTTTTTCTCACTGGGTGCTTTCACAATGACACAAGATGGTACACCTTCTTTTAAACCTGTTTTGGGACACTATTCTTTTAAGTCTATTACTGGTTTTATAATGTCACAGTCTATGGTGTTCTTCATTATGTCTTCTATTAATACACcttcattatattccaaagtTTTCAGGTCAGGTCTCTGAGCTGTTGTgtgtaatacagaaaaaaaaacgaggcCTTTAATGGACCACTGCCTTTAATATCATCAGAGCTGTTAGAGCTGTGAAGGTGTGGATGTGAACATATGTGAAACCTCTGTGCACTCGGTGTTAAATTGCACTACTCAATCCCACATAGAAGCCTTGATAAGGAGTAAATATAAACCCGAGGATGCAAATTACTTTCTGTACGACTTGTCAACTCAAATTTTTTCTCAGTTCAGTTCTTGACGTTTTTGCCACCATATTTCTTTTATGATGAATGAACTGCACTTACCTGAAGCATGCCCAGACAGCCAGGAGATCAGTGTAGCCTCTGCTGTACTGTGTAATCTGATGTAAATGGAACAGTGGATTACAATTTACAACGTAGAGCTACACTGCATCATGTTTAGAATTTATACCAGCTGGGGACTAATAACATATGCATTATATAAAGTGGACATCTATTTTTCTTGCATTTGAAATTACCTGccctggatgtgtgtgtgtactacaTCTGGGTCATATTCAGAATATAGTGCCTTTTGGTGTCtcataactttaaaagaaaagatgTATCCTTGTTTAGACTAcactaaaattatattttaccaacttaatcactgtttaagctcactttctatttctttatttttaatttagcaaAAAATGCTGATTTCAAGAAAATATTGGAATTGTTTCATGGTAAGGTTGTCTGTtttgttaaaaattaaaaatgcattataattttctaaaataattttcattacCCTGCTTTTTTACCATGGCAGGGTGGCTTAAGCCAATATAATGAATATTAGgtggaaataaatattattaattgctgaacatttagcagcaagtgtcttcagtcccttAGAAGTAAACCAGTATGAAGTTTGTGATATCACTGTTGTAAAAGGTTAGGCTgtaaaatagttatttaaataataaataatgatctaatttattaaaaatatcttcAAAACTCTTTCTATACAAGTTGCCATTTAACCACTTgatgtaacaaaaataacaaaacaattatataacttatattttaacattttgttctagaagTCAGGTTGGAACTAGTTCAGCTGAACATTAAAACCTTTAATTTTAAAGCATCTGAATggttaaatagttaaaacagagctgtagaaccAAAAACTACACTTTTAAAGGTGCTAGTTTTATTTCCAGCACTAATAAATTCTAGAAATGGGGTCAAGGATGTTTAGTATGTGTCACTtataaatgagttaaaatgactgAGAATGTGCTGTAAAGATCTTTACACATCTTTTACACATACACTGTATACATCAGTATGTGGCCAGTGGGGTCACAAATGTGACAAAcatgtcaccatgttttctttcttgttttgttttttattaaatatgtatgaaaaagtacttttaactaTTGCAAcagacacaaaaggcatgttatACTGATACTGACCCATCTGTTTGTTGCCTAAATGCCTTAAGACTAATGTGTGTGCTTCAGTGGAGAGGATTTTAGGCTTTGTATATGCAGATACAGCAATGGCATGTACTGTAAGTGGATGTAATACATGTATGTGAGACCTTACTTTTTATACTGAAAGTGAAATGTATGTTTTGCAAAAATATATGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650146.1 lncRNA upstream 427067 1050130 ~ 1051090 (+) True LOC111192863
TU82295 lncRNA upstream 429101 990813 ~ 1049056 (+) False G61014
XR_002650172.1 lncRNA upstream 429101 1047797 ~ 1049056 (+) True LOC111192923
TU82312 lncRNA upstream 430831 990813 ~ 1047326 (+) False G61014
XR_002650176.1 lncRNA upstream 561345 914900 ~ 916812 (+) True LOC111192927
TU82430 lncRNA downstream 24445 1505343 ~ 1505817 (+) True G61085
TU82451 lncRNA downstream 128227 1609125 ~ 1621557 (+) True G61100
TU82503 lncRNA downstream 277940 1758838 ~ 1761182 (+) True G61131
TU82504 lncRNA downstream 308637 1789535 ~ 1790432 (+) True G61132
TU82563 lncRNA downstream 372417 1853315 ~ 1854950 (+) False G61168
XM_022671207.1 mRNA upstream 899 1445635 ~ 1477258 (+) False LOC103024246
XM_022671208.1 mRNA upstream 899 1445635 ~ 1477258 (+) False LOC103024246
XM_022671165.1 mRNA upstream 73658 1397198 ~ 1404499 (+) True cracr2a
XM_022671164.1 mRNA upstream 470330 1000887 ~ 1007827 (+) True LOC111192900
XM_022671163.1 mRNA upstream 534236 929610 ~ 943921 (+) True LOC111192898
XM_007252404.3 mRNA downstream 149975 1630873 ~ 1693966 (+) True LOC103023715
XM_022671212.1 mRNA downstream 233919 1714817 ~ 1805742 (+) True LOC103031096
XM_022671213.1 mRNA downstream 331302 1812200 ~ 1825435 (+) False ankrd16
XM_007252403.3 mRNA downstream 331303 1812201 ~ 1825435 (+) True ankrd16
XM_007252402.3 mRNA downstream 345942 1826840 ~ 1841427 (+) True LOC103022887
TU82277 other upstream 434841 1027797 ~ 1043316 (+) True G61013
TU82289 other upstream 463696 909762 ~ 1014461 (+) True G61014
TU82286 other upstream 463696 988296 ~ 1014461 (+) False G61014
TU82298 other upstream 464441 987758 ~ 1013716 (+) False G61014
XR_002650173.1 other upstream 633467 841037 ~ 844690 (+) True LOC111192924
TU82516 other downstream 309601 1790499 ~ 1808930 (+) False LOC103031096
TU82507 other downstream 310654 1791552 ~ 1807151 (+) False LOC103031096
TU82508 other downstream 310654 1791552 ~ 1808930 (+) False LOC103031096
TU82513 other downstream 310654 1791552 ~ 1808930 (+) False LOC103031096
trnay-gua_2 other downstream 331873 1812771 ~ 1812858 (+) True trnay-gua_2

Expression Profile