RNA id: XM_022671207.1


Basic Information

Item Value
RNA id XM_022671207.1
length 1353
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC103024246
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 1445635 ~ 1481418 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGTGGGTTGAGTGTGGTTGGTGTTGTATTGATTAGTAGAGGGGATGATTGTGGTGGGTTGAGTGTGGttagtgttttaataataagttaGTTAGTAGAGCAGTATAATGGCAGTGCTGGAGGAGGCTGATGGTGGTGAGGGGTTGAGTGTGGTTTGTGTTATagtggttggttagttagttatttagtaGAGCAGTATAGTGGCAGTGGTGGGTTGAGTGTGATTAGTGTTTCGGTGATTTAGTTAATAGAGCAGTACAGTGGCAGTGGGAGGAGCAGACTgcacctcctccttctcctgctCTCCAGCCGCAGTGACCCCGCGCTCCTCCTCCGCTGGACAGGACAGCGCTGCTGGAGCAACGAGAAACAATCTCTCAGACTGAGGAATTACGCCATAATCTCTGAGGACGGACTGTTGGGTTCAGCCGGGAAGATGGGGAGTATGTATAAGGATGAGCAGGACGACTGGAAGACGGTGTGTCTGAAGTATCTCCTCTTTGTCTTCAACTTTCTCTTCTGGatgggTGGAGGAGTGGTGATGGCGGTGGGTATCTGGACTCTGATTGATAAAGGGGAGTATCTGAGTCTGCTGGCCTCCAGCACGTTCGCTGTCTCTGCGTACATCCTCATTCTGGCCGGAGCGCTGGTCATGGTCACTGGGTTTCTGGGGTGCTGTGCAGTGATCCGCGAGCAGAGGAGCCTCCTCTCCACGTACTTCTCCTGCCTGCTGCTGATTTTCCTGATTGAGCTTGTCGCAGGAGTTCTAGCTTATGTATATTATCAGAGGTTGAGTGAGGAGCTGAAGCAGCACCTGAGTAAGACGATGACTGAGAACTACGATCAGCTGGGGAAGGAGGGCATCACTCGCGCTGTGGACCGACTGCAGCAGGATTTTAAGTGCTGTGGGAGCAACAACTCCTCCGACTGGAAGCACAGCGTGTACGTCCAGTCTCCAGAAGCCCAGGGAAGGGTGGTTCCTGACAGCTGCTGCAAGACCATAACTCCAGAGTGCGGCCGGAGAGACCACCCGTCCAATATCTACAAAGTGGAGGGCGGCTGTATCACTAAGCTGGAGCATTTCCTGGCAGACCACCTGCTCATCATCGGGGCCGTGGGTATAGGTGTGGCCTGTCTACAGTTAGCAGGAGCAGTGCTGACTGCCTGCTTTATTTATCTACTGtataaagaagaggaagaagactTCTCTGACGTTTGATTGGCTAGTGCCAATATTTGGCACCTGAACAGCCAAGAGGTGACaagATATGTGGGATGGTGTTTACCTGTTGCCTGCACAGACAGATAAAGCTAGACCCGTATTGACCAATCAGCACGTCCGCTGCGGGTCAC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650146.1 lncRNA upstream 394545 1050130 ~ 1051090 (+) True LOC111192863
TU82295 lncRNA upstream 396579 990813 ~ 1049056 (+) False G61014
XR_002650172.1 lncRNA upstream 396579 1047797 ~ 1049056 (+) True LOC111192923
TU82312 lncRNA upstream 398309 990813 ~ 1047326 (+) False G61014
XR_002650176.1 lncRNA upstream 528823 914900 ~ 916812 (+) True LOC111192927
TU82422 lncRNA downstream 899 1478157 ~ 1480898 (+) False LOC103024246
TU82423 lncRNA downstream 1899 1479157 ~ 1481418 (+) False LOC103024246
TU82430 lncRNA downstream 28085 1505343 ~ 1505817 (+) True G61085
TU82451 lncRNA downstream 131867 1609125 ~ 1621557 (+) True G61100
TU82503 lncRNA downstream 281580 1758838 ~ 1761182 (+) True G61131
XM_022671165.1 mRNA upstream 41136 1397198 ~ 1404499 (+) True cracr2a
XM_022671164.1 mRNA upstream 437808 1000887 ~ 1007827 (+) True LOC111192900
XM_022671163.1 mRNA upstream 501714 929610 ~ 943921 (+) True LOC111192898
XM_022671162.1 mRNA upstream 518091 919174 ~ 927544 (+) True LOC111192897
XM_022671160.1 mRNA upstream 531330 912891 ~ 914305 (+) True LOC111192896
XM_007252404.3 mRNA downstream 153615 1630873 ~ 1693966 (+) True LOC103023715
XM_022671212.1 mRNA downstream 237559 1714817 ~ 1805742 (+) True LOC103031096
XM_022671213.1 mRNA downstream 334942 1812200 ~ 1825435 (+) False ankrd16
XM_007252403.3 mRNA downstream 334943 1812201 ~ 1825435 (+) True ankrd16
XM_007252402.3 mRNA downstream 349582 1826840 ~ 1841427 (+) True LOC103022887
TU82277 other upstream 402319 1027797 ~ 1043316 (+) True G61013
TU82289 other upstream 431174 909762 ~ 1014461 (+) True G61014
TU82286 other upstream 431174 988296 ~ 1014461 (+) False G61014
TU82298 other upstream 431919 987758 ~ 1013716 (+) False G61014
XR_002650173.1 other upstream 600945 841037 ~ 844690 (+) True LOC111192924
TU82516 other downstream 313241 1790499 ~ 1808930 (+) False LOC103031096
TU82507 other downstream 314294 1791552 ~ 1807151 (+) False LOC103031096
TU82508 other downstream 314294 1791552 ~ 1808930 (+) False LOC103031096
TU82513 other downstream 314294 1791552 ~ 1808930 (+) False LOC103031096
trnay-gua_2 other downstream 335513 1812771 ~ 1812858 (+) True trnay-gua_2

Expression Profile