RNA id: TU82451


Basic Information

Item Value
RNA id TU82451
length 255
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G61100
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 1609125 ~ 1621557 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTTACGCGGGAgacggagggatggacgtaagtgcaatatattatttattaaacaaacaagataaaataaaacagtaaacaaaacacgggtaacgcaaaCAACTTACAAAGAACAAGGCAAGGATAAATCAAACTAAGAAACtcagactaagaaactaagactAGGATACATACGGGCAACAAGGATACATACGGACTAAGGATGCAAGGAtacaaaagatacaaaagactcgacactgaacattCAAACAGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82430 lncRNA upstream 103308 1505343 ~ 1505817 (+) True G61085
TU82423 lncRNA upstream 127707 1479157 ~ 1481418 (+) False LOC103024246
TU82422 lncRNA upstream 128227 1478157 ~ 1480898 (+) False LOC103024246
XR_002650146.1 lncRNA upstream 558035 1050130 ~ 1051090 (+) True LOC111192863
XR_002650172.1 lncRNA upstream 560069 1047797 ~ 1049056 (+) True LOC111192923
TU82503 lncRNA downstream 137281 1758838 ~ 1761182 (+) True G61131
TU82504 lncRNA downstream 167978 1789535 ~ 1790432 (+) True G61132
TU82563 lncRNA downstream 231758 1853315 ~ 1854950 (+) False G61168
TU82580 lncRNA downstream 231758 1853315 ~ 1855346 (+) False G61168
TU82581 lncRNA downstream 231758 1853315 ~ 1855346 (+) True G61168
XM_022671209.1 mRNA upstream 128215 1445636 ~ 1480910 (+) True LOC103024246
XM_022671207.1 mRNA upstream 131867 1445635 ~ 1477258 (+) False LOC103024246
XM_022671208.1 mRNA upstream 131867 1445635 ~ 1477258 (+) False LOC103024246
XM_022671165.1 mRNA upstream 204626 1397198 ~ 1404499 (+) True cracr2a
XM_022671164.1 mRNA upstream 601298 1000887 ~ 1007827 (+) True LOC111192900
XM_007252404.3 mRNA downstream 9316 1630873 ~ 1693966 (+) True LOC103023715
XM_022671212.1 mRNA downstream 93260 1714817 ~ 1805742 (+) True LOC103031096
XM_022671213.1 mRNA downstream 190643 1812200 ~ 1825435 (+) False ankrd16
XM_007252403.3 mRNA downstream 190644 1812201 ~ 1825435 (+) True ankrd16
XM_007252402.3 mRNA downstream 205283 1826840 ~ 1841427 (+) True LOC103022887
TU82277 other upstream 565809 1027797 ~ 1043316 (+) True G61013
TU82289 other upstream 594664 909762 ~ 1014461 (+) True G61014
TU82286 other upstream 594664 988296 ~ 1014461 (+) False G61014
TU82298 other upstream 595409 987758 ~ 1013716 (+) False G61014
XR_002650173.1 other upstream 764435 841037 ~ 844690 (+) True LOC111192924
TU82516 other downstream 168942 1790499 ~ 1808930 (+) False LOC103031096
TU82507 other downstream 169995 1791552 ~ 1807151 (+) False LOC103031096
TU82508 other downstream 169995 1791552 ~ 1808930 (+) False LOC103031096
TU82513 other downstream 169995 1791552 ~ 1808930 (+) False LOC103031096
trnay-gua_2 other downstream 191214 1812771 ~ 1812858 (+) True trnay-gua_2

Expression Profile