RNA id: TU82516


Basic Information

Item Value
RNA id TU82516
length 5134
RNA type TUCP
GC content 0.40
exon number 7
gene id LOC103031096
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 1714817 ~ 1808930 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttctAGCCAGATGCCTGACCCTGACTACCAGGCCTCATTCACTCATTCTTAATCAtaagaaaacacctcacaacttatacaagcTGTTCCCTGAGGTAGCACTTCATGAcgtttggcatatcagtgtataaCCAATTGAAACTTGAAGAACTTTAAAACTTAAAGACTGCTAAAGTCTACCgtatttttttcactataaggcgcacttaaaatcctttgattttcctcaaaatcgtcagtgccccttttaatccagtgcgtcagagtgtagcctgctcctaaccccggctatcactgctggagtagcattagcattacccgctaaccgcgctcGCTATATTCCTGtgcagaggggagtattattggtctgtatcctgctcctaaccccgtctatcactgctggagaagcattagcattacccgctaaccgcgctcGCTATATTCCTGtgcagaggggagtattattggtctgtatcctgctcctaaccccggctagcactgccggagaggttagctaatgctaatgctaatgctccagcctagtgctggagaaattcggtaatctaagcttactgtaaataaacgaaattgttctactcaccaaaataaacacagttttgaggagagaaatctgtgtagatttacatccagcgcttgtctttttttattacagttttgtttacttagctaagCTTACTTAACCTAGATAGCCacccaccacccagcggtgagacctgctgaattagaagttccttttagtgtctcttaaaattcgctttataatccagtgcacctcgTATGTATGAACACAGATGaaaaaaatagacgttcattgatagtgtgccttacagacagtgcgaaaaatacggtattaaTGTCAGATATTTCAATATCTATAGTCTCATCAGGCCAAAAATCAATGGAGCATATGAGAGTGGTGGGCTAAACCAAGGGAGATGTGGGTCTCTATATTGGAACCATATTCCAAAGAGCTAGAAAAGCAGGGCTCGATCATCGGCTGGGTGTGGTAATTTGGTTCTGGTTGTTTTAGACACGCAGGTTCCCACTATTGAGAAATCTCACAGTAGCCCCAGCACATCGAAGCCGTCTCCCTCCGAGGGTCAAGCTCGTTCACACGGGACCCCCCGCGGTCACAGCAAAAGTGGCGCGGCCCGGGCACACCCTGACGACACCACTGCAACGGCCGAAGCTTCTGGCCAGCACCGCCTCCAACCAACATCCCGCAGCCATAGATCTGCTGATGCCCCTGTTACTGCAGCCTCACTGGACAGCGGCCTGAGCGGAAGCGCCTTCAGCCTGTTGGAAGAAGAGGGCGAGACCAACGTAGTGGACAGCGCCATCTTCCAGGTTCCCAGATTCGGAAAGATCCCAAATGGCACAGATGTTGTAAAGTCATTACATGGAGACACAGAGGgtaaaacCCAGGTGATGGGGGAGATAAAAATTGCTCTGAAAAAGGAGATGAAAACTGAAGGAGAGCAACTAGTGCTGGAGATACTTCAGTGCAGAAACATCACCTATAAATTCAAGTCTCCGGACCACCTGCCAGGTGACAGACAAGACACATATCTGTACGTGAAGCTTTACGTGGTGAACATCGCCACTCAGAAGCGGATCATCAAGAAGAAAACCAGGGTGTGTCGTCACGACCGTGAACCGTCCTTCAACGAAACTTTCCGCTTCTGCATGAACCCCACTGGACATTCCATTCAGCTCTTCTTGGTTTCAAACGGAGGCAAGTTTGTAAAGAAGACTCTGATCGGCGAGGCCTACGTGTGGCTGGACAAGTTGGACCTGCGTAAGCGGGTGGTCGGCTGGCACAAACTGCTGGCTACCACAGCCCAGATCCACTCCTAGAGGAAGCAGCCGGGCACTGTAGTTCCACAATTCCCAACAGACTCTGACTCCGGTTCTTGTAGGACTGGGAGGCCAAGCTGGAGTGAAGAAGGCGAAGCAAAGGGAGTCTAAATCATGTGTTTGTCTCGCTGAGAATTTGTAGTGATGTACGCTGGgggtaggggGGGGGAGAAAAGGTAGTCGTAAATAGAAGTGGCACAAACAAGGAGAAAGGGTCATGTGACTCTGGGCATTTGCCAGATATCTGTACACACGCGTCTGTACGCACATGTACACTCACACACCATTACACTCACCTACAAGACACACTCACCCATGTGTGTACTACACATATTTGTACCTACATATGTTATCCCACTGGGCCACCAAGGACTAGAGATCAGGAGGGAAAACTGTATATTCCGTTGCCGTTTATCGTTACATTGCATATTTTTAACTTCTGACTGCCAAGTCCAGATCCTGGAACTcctcataaatatatataatacatatagatatatataataaactaacTTATGTGTCAGTACACTGTATCATGCTTAGAAGAAGGGTATATTTATGATtgtttgcagaaagtaaatgaagacatatctcatatattatattatttttgtatgatAGATTTAGATGCATTATTAGAGACATTTATCACTTCACATTTctccttgctttctctctctctctctcagatgttTTAATGTGTTGGAAAAAGAGATGATATCATATCTGTggatttaaagtatattttgagatattttatagCTATAGAGTAAATGAAATGAGATGAAATATGATTTATTGGATGTTGTGGGTGGAAATGCTTTTGGCTGGTTTATGTACTCATATTTCCTTGTGCAGGAATTTCACTGACCTCCTTCAATGTGACATTCAGTCTGAATTTGCTTGAGATTGATCCCATTTTAGAAACTAATTATTCTTCAGAGATGGCACTGGCTTATTGACCGAATCTGAATTACTCATCAGAGAAATTTCCTAAGTCCTTCTTAATGAGAAGGAATCAAatttgttctgattggttaattactttatttttgaatAGACCGATGTGGCAGTGGGGTGTTGCAAATGTTTGGGTTAAACTAATTCTAATTCCAGCGTTGTTCATGTAGATGGTTTTGCACTTTGTCTCCAGCATGTTTTGAATGTACTGGTTGGTAGAATCTAgtcaattacttttaattatatatatatattttttatttttattatcattttgttTCTTTACACAAGCAGTCTGTCCCATATCATGCCTTTTTGTAAGCTCACTTACCTAAATAATCTCTTTAATACGATTCCCTGGGTAAATATGTCTATTTGACCCCAAATTCTCATTGGTTGTTGGACCTAAGAGCagaaaaactcttaaaacagtCTCAGCTAGACTTAAAGTAaagtacacttaaaaaaatgatatagtctttttttttgctttttatcttGCAGATCATTAAGCCTGGCTGCAATAATCAAGTTTACCAGATGTTAATCATTAATATCCTTAAAGATAATCAttccttattttaagtcaatttattattattatttttatatatacatatgtacatTTGTTTCGACACGCTGTTGTTATGTACAAATTCCCAAGCTGTGCTCTTAAATGATGTGCCATTATTGTGCTATGttgatattttgtattttgtatttttttatgtttttcagttttcacagtttttacagttttcagtTAACACAGATGCCATATCCATTGTCCCAAAGCAGGAAAGAAaaggacaggacaggacaggacaggacgTAGCCATTAGCACGACTCATAATGCCAGACTCATCACGTGTTCTACACATCTCATTAGGTTTGTGCAGGGTTACACACAGGAAGGCCTGGTTATTGAGGAACTTCTAACCTGTGCCAAAACTTGACCAAATCCACAGGTTTTACATAAGCAATTCTATGCAACCTAAACACATCTGGTGTATCTACTACTTAGTTGTATTACAAAGTATTACAAATGAGagctcttttttacatttttgtatgctttttcatgttttttttttgtttgattgtttgtttattttttgggtTAATGCTTGATCACAGACAATTTTACTGCTATTTTTGGGATTCTCTTTATGTTACGATATGCAACGTTACAAATATGAAGATTACACATCAAACCTTTACATTCCATCCAAGAGCTAGTTCGCCAGGCAGATCTGATAATGTAcataaattaacataaatactgACATCCTTTTGTTGTGTGGTGCACAATGTACATTGTGTGTTTACAAATTTTTAACCAACAGGGTCTCCAAGGTGTAATAGTGAGCCCCTTTACTCATCGAATTCTATCAAATTCTCACATCAAACACAATCAGCTCTCTGACACTTTGTTTACACCCTATAACATGTAAGAACTTTTTTTATGactatcattatttatttaacgaaaatgtgaaaagtcccaaaaaaaaaaacaagacgtTGCCATGTTCCAACTGCTCCTTTGAACAAAAGTTCATGCATACATTTCCCCATACAAATACTAATAATCATATTTAATCACACTCCTCCTTTGACTATTCAGTGCATGATGACACACATTATCCCCACCTCACCAGTTACATATGAAAATAAGAGTATTTCTTATCTTGTAAATAAAGCAAGCTTTCTTTTCTACAGATAGGATCTTCTATTAATTTTCCAGTTCAACACAGCGCATGTGTAAGGGCACAGGGCAAGGGGGGACTGTGACTCTTTTGGTCCGTGTGTATTCTGCTCAGCACATGCACTACTGGAAGAATAATCGCCGTGCTTGCCTAAAACGACTAAACTGGACTCAACCTGCACAACAGACACATGATTTACCAGTGTATAGAAATGAGCTAAAGCTGACCCTGTCGACTCAAGTAGTATCAGGAGACCTGTGATGTATTCACTTTGGATGTTGCATGTTTTGTTGGTGGTTTGTTCATAATATTTTTGTGTCCAGATTCTATTCTACAATAAGAATGACAAGActatgggggaaaaaaaatcggATTATTATCTAATGATGTATGCCGACTGTACAAAGATGCTTGTATAATCTGTCTGGTTTTCCACTCAGTGTAAACtgaaaaacattcaaaaaaaaattctaacgtCATGGTTTTTGTGGTTGTACACAAACGGTATTGATAAATTATGCAAATTGTGCTGTAAAAAAGGCTGTTGCCCTAagtctaaatattaaataatatatgtacaaTTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82504 lncRNA upstream 67 1789535 ~ 1790432 (+) True G61132
TU82503 lncRNA upstream 29317 1758838 ~ 1761182 (+) True G61131
TU82451 lncRNA upstream 168942 1609125 ~ 1621557 (+) True G61100
TU82430 lncRNA upstream 284682 1505343 ~ 1505817 (+) True G61085
TU82423 lncRNA upstream 309081 1479157 ~ 1481418 (+) False LOC103024246
TU82563 lncRNA downstream 44385 1853315 ~ 1854950 (+) False G61168
TU82580 lncRNA downstream 44385 1853315 ~ 1855346 (+) False G61168
TU82581 lncRNA downstream 44385 1853315 ~ 1855346 (+) True G61168
TU82565 lncRNA downstream 44996 1853926 ~ 1854950 (+) False G61168
TU82567 lncRNA downstream 44996 1853926 ~ 1855346 (+) False G61168
XM_007252404.3 mRNA upstream 96533 1630873 ~ 1693966 (+) True LOC103023715
XM_022671209.1 mRNA upstream 309589 1445636 ~ 1480910 (+) True LOC103024246
XM_022671207.1 mRNA upstream 313241 1445635 ~ 1477258 (+) False LOC103024246
XM_022671208.1 mRNA upstream 313241 1445635 ~ 1477258 (+) False LOC103024246
XM_022671165.1 mRNA upstream 386000 1397198 ~ 1404499 (+) True cracr2a
XM_022671213.1 mRNA downstream 3270 1812200 ~ 1825435 (+) False ankrd16
XM_007252403.3 mRNA downstream 3271 1812201 ~ 1825435 (+) True ankrd16
XM_007252402.3 mRNA downstream 17910 1826840 ~ 1841427 (+) True LOC103022887
XM_007252400.3 mRNA downstream 33348 1842278 ~ 1845762 (+) True LOC103022369
XM_015606649.2 mRNA downstream 37608 1846538 ~ 1861838 (+) True LOC103022068
TU82277 other upstream 747183 1027797 ~ 1043316 (+) True G61013
TU82289 other upstream 776038 909762 ~ 1014461 (+) True G61014
TU82286 other upstream 776038 988296 ~ 1014461 (+) False G61014
TU82298 other upstream 776783 987758 ~ 1013716 (+) False G61014
XR_002650173.1 other upstream 945809 841037 ~ 844690 (+) True LOC111192924
trnay-gua_2 other downstream 3841 1812771 ~ 1812858 (+) True trnay-gua_2
trnay-gua_3 other downstream 7085 1816015 ~ 1816102 (+) True trnay-gua_3
trnay-gua_4 other downstream 7473 1816403 ~ 1816490 (+) True trnay-gua_4
trnay-gua_5 other downstream 9138 1818068 ~ 1818155 (+) True trnay-gua_5
trnay-gua_6 other downstream 9584 1818514 ~ 1818601 (+) True trnay-gua_6

Expression Profile