RNA id: TU82850


Basic Information

Item Value
RNA id TU82850
length 222
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G61370
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 2657918 ~ 2658139 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gatgtatttagaATACATTGGCCATCTCTGCCTGACATACTGCACACACATTTTAGGAATGATTCGAGCAATGACACAACAAAGAGTTCCACACAAATTCCACACATCATAGTCCAGATCTATGAAGTCGTCCAACAAGTCTGTGAAGACTCCACCTCCCAACCTACAGGGCTGAGGGTTCATTCATCTGCAGTCATGTGAATCCCAAACAGCATAATAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82794 lncRNA upstream 68742 2588071 ~ 2589176 (+) True G61332
TU82796 lncRNA upstream 76286 2576279 ~ 2581632 (+) True G61334
TU82792 lncRNA upstream 83493 2573819 ~ 2574425 (+) True G61330
TU82779 lncRNA upstream 188434 2466510 ~ 2469484 (+) True G61320
TU82771 lncRNA upstream 201382 2455748 ~ 2456536 (+) False G61317
TU82879 lncRNA downstream 193036 2851175 ~ 2931408 (+) True G61397
TU82883 lncRNA downstream 292542 2950681 ~ 2951094 (+) True G61401
TU83048 lncRNA downstream 586718 3244857 ~ 3245129 (+) True G61558
TU83050 lncRNA downstream 608169 3266308 ~ 3266887 (+) True G61560
TU83114 lncRNA downstream 736377 3394516 ~ 3397772 (+) True G61607
XM_007259740.3 mRNA upstream 424 2653605 ~ 2657494 (+) True LOC103029880
XM_007259741.3 mRNA upstream 15814 2614208 ~ 2642104 (+) True wif1
XM_007259754.3 mRNA upstream 333658 2274367 ~ 2324260 (+) True lmo3
XM_007259753.3 mRNA upstream 333658 2277503 ~ 2324260 (+) False lmo3
XM_007259755.3 mRNA upstream 333658 2278943 ~ 2324260 (+) False lmo3
XM_007236662.3 mRNA downstream 609825 3267964 ~ 3292593 (+) True cand1
XM_022671229.1 mRNA downstream 684580 3342719 ~ 3373751 (+) False dyrk2
XM_007236657.3 mRNA downstream 703218 3361357 ~ 3373751 (+) True dyrk2
XM_007236658.3 mRNA downstream 703566 3361705 ~ 3373751 (+) False dyrk2
XM_022671231.1 mRNA downstream 703647 3361786 ~ 3373751 (+) False dyrk2
TU82609 other upstream 722419 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 836142 1821689 ~ 1821776 (+) True trnay-gua_8
trnay-gua_7 other upstream 836583 1821248 ~ 1821335 (+) True trnay-gua_7
trnay-gua_6 other upstream 839317 1818514 ~ 1818601 (+) True trnay-gua_6
trnay-gua_5 other upstream 839763 1818068 ~ 1818155 (+) True trnay-gua_5
TU83070 other downstream 638407 3296546 ~ 3303998 (+) True G61575
TU83069 other downstream 640950 3299089 ~ 3303998 (+) False G61575
TU83815 other downstream 3088065 5746204 ~ 5754284 (+) True LOC111192936
TU83965 other downstream 3324234 5982373 ~ 5993994 (+) True c7h12orf75
TU84211 other downstream 4193091 6851230 ~ 6855762 (+) True G62455

Expression Profile