RNA id: TU83070


Basic Information

Item Value
RNA id TU83070
length 2783
RNA type TUCP
GC content 0.42
exon number 6
gene id G61575
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3296546 ~ 3303998 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTTTGCGTAATTGTGGTAGGTTTGAGCTTAATTGACCCTAGACAAAACAAGATAATGTAAAGGGGTGGTAAGTCAAACTGTAGCCATGTGCTAATGAAAAATTATTAGAAATAGTTATGCTTTATGTGTATTAAGTGCTGAAGTAAAGGTGATCAAAGGTAgtttgtagaaaataaatgtgtaggagaagaaccacttttcttTGCACTCATTCACCTTTGCTTTTCTTCTTCTAAAACACAAGGACAACCAACTAATGCTCTAAAACAGCATTTTCTCAAGTCAATTGTAATGTGGCACTTTATCACCAATACTCAgatctttacacacacacaatataccaCATTATGAAAGGATcgcctttttaaaaaaatcactttcagGATATTAGCATTGGTGTTACTTGGTATTGAAAGTGTTTTTTGCCAAATAATGCTGTAGGCACGATTAATTTATCCACAGCTCTGCGTGGGGTCTTGCCGGAGGATGACCCACCAATCAGGAGCTAGACACTTTGTTGGCTCCTGCTAGCATTGGTCTGACTGGGTGGTCAGGGTAATGTCCACACTTTAACCACCAACTACATTCCTCCTTGTGAAGAGGAAGTCCGTCGGCAGTTCAGGGACCAGGTATGCTTTACAGGCTTCTTGTTGGGATTAGATTGCGTGCATTATTCAGCCTGTAGCACGCGGCACAGACATCATTCTGCAGTCTCTCTCTGTTGAGAGAACAGCCTCTCGGAGCTATGctctttccCATCTTAAGGTAATATAAGGAGAAGAAAATGGGTGTCCCAGATAAACACACTACTATGGATGTGAATGAAGACTGGCCAGCTGGACTACGTTTCCGAAAGATACGCCATCGAAGAATGAGAAGAAGTCAATCACCATCCCGTGAGGTTTCTCCAGTACCATCCTACTACTCTGAACCGATTTCAGTCCGACAGCGCAATGATGTGACTCTCAGACTCCCCCCACTTCTCAGATGGGCTCAtcaggaggaagaggatgacTCTGAGGACACTCAGAGTCTAAAGAGCCTGCCCACTGTGATGAGCACATTAGTTTTTGACCCTAAGGTCAAAAGGTCACACCACCTCTCCAAGGAACAAGTCATCTCTGGCCTCAACCTGCCTCCTCTGGTCACTTCCAAGTAATAAATTAACTTACAAGGCGAGATAGGTCAAAGTTGCTCCTGATGTGCTATGAGTCTAAATATGTCTCcaaaaatgcttttatatttCACATTAGAAATTATTACCTTCACACGATGGAAATACTAAATATACAGCACCCTCTATaagtattggcacccctggttaagaagtGTTTATTGGCTCCTAATAAATTATAATCTTTTTGATAATATaggacaaaaatgcaaaaaaagagaaaaggtaaGCTTTAATTCAAGTGCCTTTATttggtggggaaaaaaaaaatcacactttaggaaataaatattttatttatttcctaaataaataaacaccccTGGTGTTAATCATATCCTTAATCCTAATCCTTAAAACCTATATCTCTTCACGAGATGGGCAAATTCACAGTACAGAAGACAATCTATGTCATTAGCATAGGTTAAGTGTTATACATAGGTCGTGTTTCTAATACCATTTCTCATCTTAGATGTACTCTGGTGGTAAAAGGCACTGGATGTTCCAAACCCCGGGGTTTCCTACCAGTGATCAAatccaaaagtttggacaggcCTCCATGCCGGGCTGGATGCAGGCCAGATAAACTAAAAGCATCCGTAGGTCAAAGCTGCCAAATGCTGCCCTCAACCATAGCTGTCTCTGAGGAACCCCCTGGACCCCGCATCACCTTCCACAGCCCAGTCGTAAATGCTGAGTATTCTGTCACTCCCGATATAACAAAAGAGACCTGGCAAACCTTCAGAACTCACCAATCACGGAGACCTGTGATGAAAAAAGCCCAAGTGACCAACAGACAAGGTTTTAAATTCTTGTTGGAAGAGAGATACTTTCCCTGTCCAAGAGAACCACACCTGCTGGAACCACTATCTGGTTTTCAGGAGCACCTGCGACACCAGCTTGTTAACTCCCCCCTACCCCACCCAACACTACTGCCAGTCCAGCCCATCTCCTGATTAACCAGAGAGACTACCCACACCATGGTCTGCATTGGTCTAGAATGGAGCGCACTGTGGAGCTTTGCAACTCGCAAGAAAAGCGACTTCCCAGAATTACCATGACCTGCCCAACACCATCTCCCAAACACCTGCAGCACCCAGGAAAGAGGCACGTGGCTTGAGTACTTAAAGGAATTGTTTGGCCAAAAACTGcttttatatcattttacaaactcaataatttttgttttgatagatccaaaatatctaagatgagttcagtgtgtttatgtaaaGTGTGCACTGGAACTACAAgtctaatgtagctaacaagtacaTGAAACATgggactagtattgtgtcccatgagtTTTGCCACCTCCTATGGAAGCTAAAATATGCTCCACTGACCTGAGTGGTTTGCATGTGAGGCCTACCGCATTGAacatggatgtgatttctgccgaGTCGCATAGCGTTCCCAAGGACAATTCAACTGCTGGacatgatcattaccactcattgcactgtccactgtgggtggtaattcaagctgaactgcttgaatttttgcaccaggtgtggcataaagttattcaaaagcagtgtgtaaggctggtggaggagaacatgatgtcaagatgcataaaaactgtgattgaaaaccaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83050 lncRNA upstream 29659 3266308 ~ 3266887 (+) True G61560
TU83048 lncRNA upstream 51417 3244857 ~ 3245129 (+) True G61558
TU82883 lncRNA upstream 345452 2950681 ~ 2951094 (+) True G61401
TU82879 lncRNA upstream 365138 2851175 ~ 2931408 (+) True G61397
TU82850 lncRNA upstream 638407 2657918 ~ 2658139 (+) True G61370
TU83114 lncRNA downstream 90518 3394516 ~ 3397772 (+) True G61607
TU83120 lncRNA downstream 90781 3394779 ~ 3395394 (+) False G61608
TU83121 lncRNA downstream 90781 3394779 ~ 3395730 (+) False G61608
TU83122 lncRNA downstream 90781 3394779 ~ 3396035 (+) True G61608
TU83113 lncRNA downstream 92721 3396719 ~ 3397772 (+) False G61607
XM_007236662.3 mRNA upstream 3953 3267964 ~ 3292593 (+) True cand1
XM_007259740.3 mRNA upstream 639052 2653605 ~ 2657494 (+) True LOC103029880
XM_007259741.3 mRNA upstream 654442 2614208 ~ 2642104 (+) True wif1
XM_007259754.3 mRNA upstream 972286 2274367 ~ 2324260 (+) True lmo3
XM_007259753.3 mRNA upstream 972286 2277503 ~ 2324260 (+) False lmo3
XM_022671229.1 mRNA downstream 38721 3342719 ~ 3373751 (+) False dyrk2
XM_007236657.3 mRNA downstream 57359 3361357 ~ 3373751 (+) True dyrk2
XM_007236658.3 mRNA downstream 57707 3361705 ~ 3373751 (+) False dyrk2
XM_022671231.1 mRNA downstream 57788 3361786 ~ 3373751 (+) False dyrk2
XM_015602283.2 mRNA downstream 57828 3361826 ~ 3373751 (+) False dyrk2
TU82609 other upstream 1361047 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 1474770 1821689 ~ 1821776 (+) True trnay-gua_8
trnay-gua_7 other upstream 1475211 1821248 ~ 1821335 (+) True trnay-gua_7
trnay-gua_6 other upstream 1477945 1818514 ~ 1818601 (+) True trnay-gua_6
trnay-gua_5 other upstream 1478391 1818068 ~ 1818155 (+) True trnay-gua_5
TU83815 other downstream 2442206 5746204 ~ 5754284 (+) True LOC111192936
TU83965 other downstream 2678375 5982373 ~ 5993994 (+) True c7h12orf75
TU84211 other downstream 3547232 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 5228761 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 5229350 8533348 ~ 8540123 (+) True LOC103041471

Expression Profile