RNA id: TU83120


Basic Information

Item Value
RNA id TU83120
length 303
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G61608
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3394779 ~ 3396035 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cttagcaaccacctagtaactgcttagcaaccactctctctttctcactctctctctacttctctcactctctctttctcactctctctctacttctctcactctctctttctcactctctctctacttttcactctctcttttgctctctacttctctgtttctcactctctcttttgctctctacttatctacttctcgctctctcttttgctctctacttctcactctctcttttgctctctacttctctatttctcattatctctttctcactctctctctatgtctctatttctcact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83050 lncRNA upstream 127892 3266308 ~ 3266887 (+) True G61560
TU83048 lncRNA upstream 149650 3244857 ~ 3245129 (+) True G61558
TU82883 lncRNA upstream 443685 2950681 ~ 2951094 (+) True G61401
TU82879 lncRNA upstream 463371 2851175 ~ 2931408 (+) True G61397
TU82850 lncRNA upstream 736640 2657918 ~ 2658139 (+) True G61370
TU83113 lncRNA downstream 1325 3396719 ~ 3397772 (+) False G61607
TU83115 lncRNA downstream 1634 3397028 ~ 3397772 (+) False G61607
TU83118 lncRNA downstream 1634 3397028 ~ 3397772 (+) False G61607
TU83212 lncRNA downstream 299840 3695234 ~ 3697781 (+) True G61657
XR_002650147.1 lncRNA downstream 316848 3712242 ~ 3713423 (+) True LOC111192864
XM_022671229.1 mRNA upstream 21028 3342719 ~ 3373751 (+) False dyrk2
XM_007232291.3 mRNA downstream 167351 3562745 ~ 3642423 (+) True rap1b
XM_022671240.1 mRNA downstream 249923 3645317 ~ 3651651 (+) True mcat
XM_007232281.3 mRNA downstream 249923 3645317 ~ 3650065 (+) False mcat
XM_007232278.3 mRNA downstream 260768 3656162 ~ 3694924 (+) True cfap54
XM_022671242.1 mRNA downstream 451649 3847043 ~ 3853727 (+) True LOC103031106
TU83070 other upstream 90781 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 90781 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 1459280 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 1573003 1821689 ~ 1821776 (+) True trnay-gua_8
trnay-gua_7 other upstream 1573444 1821248 ~ 1821335 (+) True trnay-gua_7
TU83815 other downstream 2350810 5746204 ~ 5754284 (+) True LOC111192936
TU83965 other downstream 2586979 5982373 ~ 5993994 (+) True c7h12orf75
TU84211 other downstream 3455836 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 5137365 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 5137954 8533348 ~ 8540123 (+) True LOC103041471

Expression Profile