RNA id: XM_022671232.1


Basic Information

Item Value
RNA id XM_022671232.1
length 2533
RNA type mRNA
GC content 0.49
exon number 15
gene id mdm1
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3529520 ~ 3548702 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGGCAACCCGCGTCCACCGTAACCGTAACCGACTCTCTAGCTACCGCAGTGCTCGGCAGTTTCTCAGTGTCCAACAGTCCACTAAAACAGAGTTTATACACCGTGTCCGACCCGCCTGAGCTCTCCTCTACAGAGCTAACATGACAGTTCGCTTTAAGGGAATCACTGAGTATCAGAATAAGTACAAGGCTCGAGCGAGGCGGGTGAAAAGCGCGCCACCGCAGCGCAGGATGCGATTGGCTGGAGTCCGCTCTGACCAGCTGGGAATAAGCAGAGAACCTCAGTTCCAGTCCAAGAGAAGGGTACCCTTCTATCCACCACAAGTATCTAGTTCTCTACAGTGGAGAGATTCAGCTGGTTCATTAAGGCAGCAGGAGATAGCCAGGCCTGGTAACCCCCCAGCTTCGGTCCATGTGACACGGACCAGCAGTCCAGAGAAGGTAGAGACCCCTCTGGCCCCAAGAACATCAAAACCACAGagggcaaagaaaacaagccaaCACGTTGAATCTGTTTCATGCTCTCAAGTGAGAAGTCCTTCTGCTGACCAGCAGGAACAGGAACATCCTTCGAATGGGTTAAATTACGCTCTAAGGAAGAAGGCAGGTCTGAGGACAGCACGCCAGAGGAATGGCCGCCAGAATTCAGAGTACCAAAGGCAGTTTCTGTGGAAAACTCCAGCAAATGAATCTCCTCTTCTTGCAGCACAACAGATGTTGTACACCAGTAACAGGTCAATCCCACCATTCAAGTTTAATCCAGTAGAAATTGAGACAGAGTATAAGAGGAACTTTAAAGGGTCTCCTCCACACAGACCCCCACGCTTACGACGAGATGTGGAATTAAATGAGCTTCCTGAGAATATCTCTTCTGATAAGCAGGAGCGGGAAAAAAAGAGGGAGCAGCGTCTCTCAAGGAAGCCGAGATCCAGAGAAGATTCTCATCCAGAGCCACAGCCTGTGCAGCAGGAAGTGACATCTTCTCAAAAAGATAGTTCACCTAAGGTCCTGAGGAAAGTAAAGACGGAATATACCTCAAATTTCCGCTCTCCCCTGCAATACCGCTACAAAGATGGAGCCTGGATCCGGTCCAGGGTTTCAGGAGAGGAGGGACACGAGTGGTATCACGAGGTGCAAGATTTGCGGGCGAAGGCAGATGCCTACAGGAAACGGGCCTGGGGAACACACTTCTCACGCCAACACCTCAGCCAGGTCATATCAGAACAGAACTGCCTGTGGGAGGCCTCCAGTGCCTCTTCATCCTCCACTCTCACTGAACAGGACAGCCATTCTCACAGCAGCCCCACCATCGAGGCCTTGGACCTGGCCAGGGTGGATAGTGTCAGGGGAAGCTGTAGTCCTGGGGCATCTGTCTCCCTGTCAACTAGTAGGAGGAGCTCTTTTGAAGGTGTGGGGCTTTCCGACGGTCCCACCCTCCCTCTACAGAGGAAACAGGCATGGGATGAGGAAGAACGTCCTTATGTGAACGGCGTGTCTGAAATTAAGCCATTGAGGGAGGAGCCACCTGTCCAGCAAGCAGAGGAGTCAGATGAGGAAGCAGATACAAATGAGCATTTGGAGGACAAAGGGGAGAAATGCTCTGTTGAGGAGGGAAGGTTACCAACTCCCAAACTGAAAACCATAAGGACTGTGCAGAGGACCCATCATGACCGCACAACTCCAACGATAGGAGGCGCTGTCTTAGTTTCTCCACCAAAGACAAAGAATTCCTCAAGGACAGCTCGGAGGAGTGAAGCACCACTTGGCAAAGTCCACTCACCTTTTAGACATCTCAGCCATGGCTCACCCCCACGAGCACACAGCAAGGCTGAGAACGGTAGCTTGCCCCGTTCTTCCCCTGCTGCAGGGTTAGCCACAATTGACCCGCTTCCACTAAGAGACGACACATGGGCTCGAGACTCTCCTGAACCAAAACCAGTCCGAACACCTCAGAGGCGAACTCTCAGTGCCACACTCATAGCCACCAGCTCACCACGTGCCAACAGAATCCAGggtacactgaggaacccagaGTTCCAGCACAACGGTAACTTGGGGCTTCACCGGCCAGACCAATTTGTCTTCCTCTCCAGCGATTCTGGTGTATCAGACAACGATGACAGGATGTCTCAGATCTCGTCCAGGTCAGCAGCTTCTTGCTCCATGGCGTCTGAGGTGCTGGACAGAGCCCAGAGGAGGAAAGAGGACTTCTGGGGAAAGACTTAATCAGGAACAATAATCCTTCAGTGTGGAGACTATAAATCAGCAATGTTTACTATGTAGTGTAATTTTTAATGTGAGTGGACATTGTGTGAACGTTTTGTACACAGTACAGAATATagatttataatgcattattattttatattttgatactTTTAAAATTGTGTGGTCATGGCTAAAGTATTCTGGTATGGGCAAAGATTTTTAACAATGTACATTTCTTCTTtggcttttgtttttaatagttttaattgtAGAAATATGAATcatgcaaaataaaacaaaaagcaaattcTGCACATTTTACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83160 lncRNA downstream 13705 3512201 ~ 3515815 (-) False G61630
TU83158 lncRNA downstream 14354 3512201 ~ 3515166 (-) True G61630
TU83135 lncRNA downstream 130750 3398558 ~ 3398770 (-) True G61611
TU83133 lncRNA downstream 131748 3396720 ~ 3397772 (-) True G61610
TU83129 lncRNA downstream 133813 3394778 ~ 3395707 (-) True G61609
TU83232 lncRNA upstream 14104 3562771 ~ 3642517 (-) True G61670
TU83233 lncRNA upstream 41561 3590228 ~ 3642517 (-) False G61670
TU83244 lncRNA upstream 102178 3650845 ~ 3651547 (-) True G61676
TU83330 lncRNA upstream 239435 3788102 ~ 3854961 (-) True G61746
TU83339 lncRNA upstream 294007 3842674 ~ 3846010 (-) False cdpf1
XM_022671147.1 mRNA downstream 57967 3467202 ~ 3471553 (-) True LOC103044476
XM_022671228.1 mRNA downstream 503653 2673173 ~ 3025867 (-) True grip1
XM_007259739.3 mRNA downstream 861022 2661803 ~ 2668498 (-) True tmbim4
XM_007259742.3 mRNA downstream 916706 2600412 ~ 2612814 (-) True lemd3
XM_022671226.1 mRNA downstream 935350 2574909 ~ 2594170 (-) False msrb3
XM_007232279.3 mRNA upstream 146520 3695187 ~ 3703230 (-) True rint1
XM_007232275.3 mRNA upstream 285665 3834332 ~ 3838502 (-) True LOC103030485
XM_007232276.3 mRNA upstream 291934 3840601 ~ 3846469 (-) True cdpf1
XM_007232293.3 mRNA upstream 306875 3855542 ~ 3865736 (-) True LOC103036484
XM_022671243.1 mRNA upstream 320071 3868738 ~ 3889640 (-) True LOC103036181
TU83086 other downstream 214281 3314153 ~ 3315239 (-) True G61587
XR_002650182.1 other downstream 995173 2496078 ~ 2534347 (-) False LOC103031776
TU82817 other downstream 1071411 2454547 ~ 2458109 (-) False LOC103032312
TU83243 other upstream 103299 3651966 ~ 3658268 (-) False G61676
XR_455047.3 other upstream 786451 4335118 ~ 4382050 (-) True LOC103039416
XR_002650185.1 other upstream 794250 4342917 ~ 4382051 (-) False LOC103039416
TU83573 other upstream 1073546 4622213 ~ 4622577 (-) True G61942
TU84110 other upstream 2825802 6374469 ~ 6374980 (-) True G62377