RNA id: TU83415


Basic Information

Item Value
RNA id TU83415
length 282
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G61815
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 4122682 ~ 4122963 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgagatattttattatgagcagcagaagaagaagatatACAATACAGCTACTCAAAAAGGAGTGGGAAGAAGAAAACTTATTTAAACCCACCCCTTTCTTCAAAATTAACATAACTTACATAGCTTACATAGCCACTTCCCATCGACTTACATTAGATGAAACTTAACAACagagaaaattaaatttacaaatacTTAGAATCCTCTAACCTAGATACCAACAGCGATAGTAAAGAAAGTTCTAATACTATACACAAGCAGCCCTCATACCAACAGTGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83399 lncRNA upstream 65723 4056439 ~ 4056959 (+) True G61804
XR_452999.3 lncRNA upstream 78374 4011384 ~ 4044308 (+) True LOC103028258
XR_002650148.1 lncRNA upstream 408434 3713557 ~ 3714248 (+) True LOC111192865
XR_002650147.1 lncRNA upstream 409259 3712242 ~ 3713423 (+) True LOC111192864
TU83212 lncRNA upstream 424901 3695234 ~ 3697781 (+) True G61657
TU83385 lncRNA downstream 7354 4130317 ~ 4131090 (+) True G61790
TU83380 lncRNA downstream 8800 4131763 ~ 4136771 (+) True G61786
TU83463 lncRNA downstream 20098 4143061 ~ 4143691 (+) True G61852
TU83484 lncRNA downstream 196889 4319852 ~ 4325034 (+) True LOC111192934
XR_002650184.1 lncRNA downstream 200565 4323528 ~ 4324763 (+) False LOC111192934
XM_022671246.1 mRNA upstream 23293 4083683 ~ 4099389 (+) True mcm10
XM_022671247.1 mRNA upstream 23293 4083683 ~ 4099389 (+) False mcm10
XM_007232266.3 mRNA upstream 48119 4048242 ~ 4074563 (+) True LOC103027723
XM_007232267.3 mRNA upstream 48119 4052342 ~ 4074563 (+) False LOC103027723
XM_022671245.1 mRNA upstream 48119 4054051 ~ 4074563 (+) False LOC103027723
XM_007252707.3 mRNA downstream 552396 4675359 ~ 4701435 (+) True LOC103041372
XM_022671258.1 mRNA downstream 1128170 5251133 ~ 5261551 (+) True ifrd1
XM_022671166.1 mRNA downstream 1298805 5421768 ~ 5423304 (+) True LOC107197570
XM_022671267.1 mRNA downstream 1617592 5740555 ~ 5765785 (+) False LOC111192936
XM_022671266.1 mRNA downstream 1630339 5753302 ~ 5765785 (+) False LOC111192936
TU83070 other upstream 818684 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 818684 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 2187183 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 2300906 1821689 ~ 1821776 (+) True trnay-gua_8
trnay-gua_7 other upstream 2301347 1821248 ~ 1821335 (+) True trnay-gua_7
TU83815 other downstream 1623241 5746204 ~ 5754284 (+) True LOC111192936
TU83965 other downstream 1859410 5982373 ~ 5993994 (+) True c7h12orf75
TU84211 other downstream 2728267 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 4409796 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 4410385 8533348 ~ 8540123 (+) True LOC103041471

Expression Profile