RNA id: TU83444


Basic Information

Item Value
RNA id TU83444
length 3288
lncRNA type inter_gene
GC content 0.48
exon number 18
gene id G61837
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 4083724 ~ 4099381 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAATGTGAGCCTTCTGGCTAGTTTAATTTAGGCTGTTTACCACAGCCACACATGACACAAACATTCATAAACaggaaaaacttttaaaaatcattaaaaatccaTTATcacatacaaacaaataaaaacagacaaacatacAGCTGATTACAGCCAGCTGATGAGGTAAGAAAAAGCAAATCAAGTTTCAAATGGACTGCGACAGCTCGAATCCCATTCAGGCCTCCTGTGAGCATGAACCCCATCAGCATAAACAGTTCTGCCGCAGCCTCTAGCCGGAGAGACTTTTCCAGCTTCAACTGCTTTGTTTCCTTTAGCAGCGTCTGAGTGAACGACTCCAGAGGGATGGAGTCAGGCAGCAGAGGGAGGCTGCTGGCCCTATTTCATACTGTTGAGGAATTTGGGCTGCTCTTCACCGCGTGTCAGCAGCAGCTCTCCTCCGATCTTTGGTCCTTTCTTCTCCTTCAACATGCCGTCCCTTTCCCACTTGAACAGCCCACAGTTGCTGCAAGCTGCAGTGGGTAACCGGGCCAGGCAGATTTTTCTCTGGCCGCATGGGCATTTAAAGAAGCGTTTGGTGGCATCATGCCAGTGGTAGTCGTGCTTCTCCTCCACGCAACGATCAGCCGGCTTGAAGTGAGTGTACTTGCAGTTTTTACAGGTGACCGCTCGACACTTCATTTCTCTGATGCCCCTCATCTTTTCTTCCAGCTTCTCCTTCTGTACAAGCGGATCAAAGTAGTCCTGCATGGCCTGTGCCTCCACCTCTCCCATAATCCAGGAGTTTGAGGACTTTGCATTGAGAATGCGCTGAAACTCCTCTGATTGGATGTATTCTAGTTGTTCCCGCCTCCTCTTCTGAGCTGGCTCCTCTTCCTCCACATCAGCAGCATTCTTATCACCTTCAGGTGAAGTCAGGCTGCGCTCCACTCTGGCGCTGATCGCACCGCTGTCAGACCGCTTGCGTTTCACAGCGTTTGGGTCGTCTTTAACTATGGCTCCTCCTTTAGCCTGAAGCTTTCTCACTGCAGCTAGCTTTGCAGAAGACAGGCTCTTTGAACGAGGAGGAGGAGACATGTCCAGGAGAATATCATCCCCCTCTGAAAATCCTCTTCCTAGGGTGGGTATAGGAGGAGCACTGAGACGTCGTTCAGGTGGAGAGGAACGTTTTGGAACCTCTGATGCAGCTTTGGGTGAGAGCAGCGCACCCCTGTTTACAGCGGGTCTAGCTGGAACAGCAGCACCCCTGGTTTTCTGCATAACTCTTTTTTGGATCTCTTCTGCCCTCTTCTGTCTGGCCTCCAGTCTTTGCTTGTGCATTTGTTTCTGCTGCTTAAGAAGGTCTGAGGCAGAGATAGATTGAACAGTTGATCCAGAAGAATCTGTTGGTTTAGATTTTCCTAAATGTCTCTTTATATTAAGTGCTCCCGGTGTAGGCATTGACATTAGGCTTCTGAAGTCATCAGTACATCCGGATACCTCGCCTGAACTAagtgCAAGCTTCTTGTTAGGAATAGAAGCCAAAACCGACTGGATTGAGGGCTGTTTTTTTGGCTGTGGGGCAGTCACAGATGGTGCACAAGCAAGTGAAGACATGCCCCCGTAGTGGAAGTCACCCTGACACAAGCGTTCTCTCAAACCTCCCCGGTTCTTCACTTTACCAGGGGCTGATCCGGTGAAGCTGCTCTGAAGCTCCGCTCTCTTGGAGCTCATCTTCTTGTACTGAGCTTTAACATGGTACTGGCAGAACTGACattcataCATATTGACCAACTGGGTGCAGGAatctccatttttctttttagccTTGCAAGTACCAAAATCCATAGCTTCTCCCATCATTAGCACCTTCTGTGGGTGGTCCACTGTGAGGGAAAGCTCATTAGAGCCTTCTTTATTCTTCATTTGGTTGGGGTTAAGTATGCCAATTACCGTCCCAGTGTCTGTCTTCCATAGGTCAGTGTGAACAGTCCCAAAGAGAAAGAGCGACACATTCACCTCCAGGTTATGAAGGTCATTCAGCTTCCAGATACTGAACGTTTTTCCATTATTCTTGCTCTGCGGGGTAATTTTATTTATGACCACAGCAAAGGTAACCCAGTCACTGTCCTCAAGATTGTCTTTGGCGAGTCGATCAGGCAGCTGAGAGAGCTTGATCATCCTGCGGTTAGCCATTTTGCTTTCAATCTCTACCGAGGACAGACGAggtctcCTTAGACGAAGACCTGAGAATTTCTCCACAGCAACGTCCTGAGTAGAAGGTGGTCGGGGTGTGGCTTGTCTTGCAATGGGAGGAGCTACACCAGCCATTTTACTTGGTGGCGGTGACGTCATGGTATTGTTAATTTTACCGCTACTTCTCATCGGCTGTGACAACCTGTCACCCACACTCTGACTCTGCACACTCCGGTTTTCTGCAGAGGCTGCTTTGGCTTGGTGTGCAGTTATCTGCCTGCCCTCTGTTTCTAGAGGTGGAGACCCTATAGCCCCTCTCGGTGCAGATGGGGGGGATTGGCTGGGAAGACGTGTTTGTAGAGCAGGTTTGCTAGACTGCTGAGGAGAGGTCAGGCGCTTGGCAGGAAGCTTTGCTGCTGGTGAAGTTCTGCTGCTTATCTGTTTCTGTGAGGAGGGTTTATCTTCAGCAGGTTTGGGTTTATAATCTGCACCTTTCTGAGAtgcctgcagctgctgctgtagctTCTGCATCTTCTCACGCATGCTCCTCAACTCCGCCTCCAAGTCCTCTTTGGATTTATTGAGTTCACTTTCCACTTCTGCACTTGAGTTTGCAGCTTCCACAacctcttctgcttcttcttcttctggctCAGCATAGGCTTCtccttcatcaccatcatcatcaaacAGATTATCCAGATTGTCCTCTTCTCCAGCAGCAGAAGTCTCTATCTTCTCACCCTGACTCTCCTCAAACAAGGAAAGCAGCAGGTCCAGGTTCTCATCCTCTGCAGTCATCTCTGCAGCTCCAGTCCTTCTCTCTGAACTGAAGCAGCGCTGTGTTTATCTGATGGAAGATTCTGATGAGTCTGATGTTCAGTATTTTTTCAGGGTCAAATGAATCTGTAGCTCTGAAGAACAGATCTGTCGATTTGTTCTGCTGAACTCAAAAACAGAATAACACACAGTCCGCCCCCCAGCTCTCACACCAGCAACACACCAATCACAACAATGCTACAGTACCGGGCTTATTATATtcctaaatatttaatatatcagGAATATGGACTCCAAATCCAGGTAAAATGTTGTTCAGCCCGTTCCcgtctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83434 lncRNA downstream 7752 4073769 ~ 4075972 (-) False G61833
TU83436 lncRNA downstream 7752 4073769 ~ 4075972 (-) True G61833
TU83418 lncRNA downstream 70384 4010788 ~ 4013340 (-) True G61818
TU83379 lncRNA downstream 73781 4009437 ~ 4009943 (-) True G61785
TU83350 lncRNA downstream 145934 3936684 ~ 3937790 (-) True G61760
TU83462 lncRNA upstream 30958 4130339 ~ 4130964 (-) True G61851
TU83467 lncRNA upstream 50170 4149551 ~ 4149817 (-) True G61856
TU83479 lncRNA upstream 212668 4312049 ~ 4313739 (-) True LOC111192867
XR_002650149.1 lncRNA upstream 213645 4313026 ~ 4313725 (-) False LOC111192867
TU83538 lncRNA upstream 423778 4523159 ~ 4523371 (-) True G61907
XM_007232268.3 mRNA downstream 93242 3968846 ~ 3990482 (-) True wnt7b
XM_007232271.3 mRNA downstream 153121 3919017 ~ 3930603 (-) True LOC103029416
XM_007232273.3 mRNA downstream 168095 3900201 ~ 3915629 (-) False LOC103029733
XM_007232264.3 mRNA upstream 1584 4100965 ~ 4114368 (-) True LOC103027117
XM_022671248.1 mRNA upstream 1584 4100965 ~ 4110923 (-) False LOC103027117
XM_007232263.3 mRNA upstream 17357 4116738 ~ 4121756 (-) True phyh
XM_022671148.1 mRNA upstream 25409 4124790 ~ 4127308 (-) True LOC111192866
XM_022671253.1 mRNA upstream 219059 4318440 ~ 4334012 (-) False LOC103040249
TU83243 other downstream 425456 3651966 ~ 3658268 (-) False G61676
TU83189 other downstream 535022 3544185 ~ 3548702 (-) False mdm1
XR_002650183.1 other downstream 535053 3529527 ~ 3548671 (-) False mdm1
TU83187 other downstream 535302 3544185 ~ 3548422 (-) False mdm1
TU83086 other downstream 768485 3314153 ~ 3315239 (-) True G61587
XR_455047.3 other upstream 235737 4335118 ~ 4382050 (-) True LOC103039416
XR_002650185.1 other upstream 243536 4342917 ~ 4382051 (-) False LOC103039416
TU83573 other upstream 522832 4622213 ~ 4622577 (-) True G61942
TU84110 other upstream 2275088 6374469 ~ 6374980 (-) True G62377
XR_002650186.1 other upstream 2533629 6633010 ~ 6695384 (-) False pphln1

Expression Profile