RNA id: TU83561


Basic Information

Item Value
RNA id TU83561
length 421
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G61930
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 4596566 ~ 4596986 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aactaaacagggcagggatatatatttacaagggaaaacaaacaagaagctaatactagacagggaaaaactaggctagacaataataaataaactaagcagaaaggaactaaacactaagcagggaactggggaaacgaggaagaaacaagaaactagaaaactaaacaagaaataaacacggagcaagaactagggctatgaaacgcagagaaacacagagagacaaaacaacaggggaaggtgcaaagaccgacggagacaaagtggcagaggagggctatttaaagaaacaggaaacgcactataattggaaacacctggggaaggggcggagctacaaatgagacaagtggtggaaaggtactgagacgggagacacaggggagcataggtcacgtggggaagacacacagagaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83538 lncRNA downstream 73195 4523159 ~ 4523371 (-) True G61907
TU83479 lncRNA downstream 282827 4312049 ~ 4313739 (-) True LOC111192867
XR_002650149.1 lncRNA downstream 282841 4313026 ~ 4313725 (-) False LOC111192867
TU83467 lncRNA downstream 446749 4149551 ~ 4149817 (-) True G61856
TU83462 lncRNA downstream 465602 4130339 ~ 4130964 (-) True G61851
TU83571 lncRNA upstream 23736 4620722 ~ 4621086 (-) True G61940
TU83572 lncRNA upstream 24625 4621611 ~ 4621826 (-) True G61941
TU83574 lncRNA upstream 26901 4623887 ~ 4624210 (-) True G61943
TU83576 lncRNA upstream 28511 4625497 ~ 4626107 (-) True G61945
TU83586 lncRNA upstream 38167 4635153 ~ 4635421 (-) True G61955
XM_022671256.1 mRNA downstream 135041 4447876 ~ 4461525 (-) True LOC107197701
XM_022671254.1 mRNA downstream 170410 4335118 ~ 4426156 (-) False LOC103039416
XM_022671257.1 mRNA upstream 403964 5000950 ~ 5199612 (-) True LOC103023194
XM_007252710.3 mRNA upstream 717571 5314557 ~ 5336399 (-) True LOC103042505
XM_022671259.1 mRNA upstream 859723 5456709 ~ 5494651 (-) True LOC103037729
XM_022671260.1 mRNA upstream 859723 5456709 ~ 5494645 (-) False LOC103037729
XM_022671261.1 mRNA upstream 1047523 5644509 ~ 5653023 (-) True cmas
XR_002650185.1 other downstream 214515 4342917 ~ 4382051 (-) False LOC103039416
XR_455047.3 other downstream 214516 4335118 ~ 4382050 (-) True LOC103039416
TU83243 other downstream 938298 3651966 ~ 3658268 (-) False G61676
TU83189 other downstream 1047864 3544185 ~ 3548702 (-) False mdm1
TU83187 other downstream 1048144 3544185 ~ 3548422 (-) False mdm1
TU83573 other upstream 25227 4622213 ~ 4622577 (-) True G61942
TU84110 other upstream 1777483 6374469 ~ 6374980 (-) True G62377
XR_002650186.1 other upstream 2036024 6633010 ~ 6695384 (-) False pphln1
TU84255 other upstream 2074624 6671610 ~ 6737948 (-) False G62484
XR_002650150.1 other upstream 2125116 6722102 ~ 6723530 (-) True LOC111192868

Expression Profile