RNA id: TU83576


Basic Information

Item Value
RNA id TU83576
length 611
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G61945
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 4625497 ~ 4626107 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaaggtaatttaaaaaccaggacatttcctcacttttaaaaaaaaaaaattgggacacccgggacaggacgtgaaatatggacgtttggtcaccctaccttacaaaagtatttggaccccttgaacttttcaaaacttttcttttgacacatttcaggctttaaacataaagatatgaaattgtaattcttttgtaaagaatcaacaacaagtgggacacaatcgtgaagtggaacgaaattcaTTGGATatttaaaactctttttttagaaataaaaaactgaaaagtgaggggtgcaatattattcggccCCTTTgctttcagtgcagcaaactcactccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactgatgatgataaataaaATCCACTTGTGTGTAACCCAGTCTCTgtataaatgcacctgctctgtgatcagagtctcagagttctgtttaaagctatgcagagagcatcatgaagaccaaggaacacacCAGACAGGACCGAGATACTGTTGTGAATAAGTTTAAAACCggatttggatacaaaaagatttcccaagctttaaacatctcaagcAGCACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83574 lncRNA downstream 1287 4623887 ~ 4624210 (-) True G61943
TU83572 lncRNA downstream 3671 4621611 ~ 4621826 (-) True G61941
TU83571 lncRNA downstream 4411 4620722 ~ 4621086 (-) True G61940
TU83561 lncRNA downstream 28511 4596566 ~ 4596986 (-) True G61930
TU83538 lncRNA downstream 102126 4523159 ~ 4523371 (-) True G61907
TU83586 lncRNA upstream 9046 4635153 ~ 4635421 (-) True G61955
TU83631 lncRNA upstream 143856 4769963 ~ 4770173 (-) True G61997
TU83634 lncRNA upstream 169608 4795715 ~ 4796010 (-) True G62000
TU83692 lncRNA upstream 416402 5042509 ~ 5043811 (-) True G62054
TU83694 lncRNA upstream 438531 5064638 ~ 5071737 (-) True G62056
XM_022671256.1 mRNA downstream 163972 4447876 ~ 4461525 (-) True LOC107197701
XM_022671254.1 mRNA downstream 199341 4335118 ~ 4426156 (-) False LOC103039416
XM_022671257.1 mRNA upstream 374843 5000950 ~ 5199612 (-) True LOC103023194
XM_007252710.3 mRNA upstream 688450 5314557 ~ 5336399 (-) True LOC103042505
XM_022671259.1 mRNA upstream 830602 5456709 ~ 5494651 (-) True LOC103037729
XM_022671260.1 mRNA upstream 830602 5456709 ~ 5494645 (-) False LOC103037729
XM_022671261.1 mRNA upstream 1018402 5644509 ~ 5653023 (-) True cmas
TU83573 other downstream 2920 4622213 ~ 4622577 (-) True G61942
XR_002650185.1 other downstream 243446 4342917 ~ 4382051 (-) False LOC103039416
XR_455047.3 other downstream 243447 4335118 ~ 4382050 (-) True LOC103039416
TU83243 other downstream 967229 3651966 ~ 3658268 (-) False G61676
TU83189 other downstream 1076795 3544185 ~ 3548702 (-) False mdm1
TU84110 other upstream 1748362 6374469 ~ 6374980 (-) True G62377
XR_002650186.1 other upstream 2006903 6633010 ~ 6695384 (-) False pphln1
TU84255 other upstream 2045503 6671610 ~ 6737948 (-) False G62484
XR_002650150.1 other upstream 2095995 6722102 ~ 6723530 (-) True LOC111192868
TU84254 other upstream 2109056 6735163 ~ 6737948 (-) True G62484

Expression Profile