RNA id: TU83630


Basic Information

Item Value
RNA id TU83630
length 237
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G61996
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 4769937 ~ 4770173 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttcacacaaagcaatccagactgttctcatacagagttccccaatggtggaacaaactaccttccactaccagatcaggagaatctctcactatctttaataaactcctgaagacagagctcttcaaagagcacttactctcctaacacctctaacacactaactacttctaacctcatttccttcttctcctccttcactcctctatcccattatttccctttgacctcctttag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83560 lncRNA upstream 173675 4596051 ~ 4596262 (+) True G61929
TU83545 lncRNA upstream 208061 4528087 ~ 4561876 (+) True G61914
TU83491 lncRNA upstream 406909 4339686 ~ 4363028 (+) True G61873
TU83495 lncRNA upstream 406909 4360451 ~ 4363028 (+) False G61873
TU83490 lncRNA upstream 412935 4350990 ~ 4357002 (+) False G61873
TU83633 lncRNA downstream 25549 4795722 ~ 4796011 (+) True G61999
TU83638 lncRNA downstream 65099 4835272 ~ 4835472 (+) True G62004
TU83667 lncRNA downstream 217249 4987422 ~ 4987718 (+) True G62030
TU83673 lncRNA downstream 229068 4999241 ~ 5002904 (+) True G62036
TU83707 lncRNA downstream 541732 5311905 ~ 5315202 (+) True G62069
XM_007252707.3 mRNA upstream 68502 4675359 ~ 4701435 (+) True LOC103041372
XM_022671246.1 mRNA upstream 670548 4083683 ~ 4099389 (+) True mcm10
XM_022671247.1 mRNA upstream 670548 4083683 ~ 4099389 (+) False mcm10
XM_007232266.3 mRNA upstream 695374 4048242 ~ 4074563 (+) True LOC103027723
XM_022671258.1 mRNA downstream 480960 5251133 ~ 5261551 (+) True ifrd1
XM_022671166.1 mRNA downstream 651595 5421768 ~ 5423304 (+) True LOC107197570
XM_022671267.1 mRNA downstream 970382 5740555 ~ 5765785 (+) False LOC111192936
XM_022671266.1 mRNA downstream 983129 5753302 ~ 5765785 (+) False LOC111192936
XM_022671265.1 mRNA downstream 987980 5758153 ~ 5765785 (+) False LOC111192936
TU83070 other upstream 1465939 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 1465939 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 2834438 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 2948161 1821689 ~ 1821776 (+) True trnay-gua_8
trnay-gua_7 other upstream 2948602 1821248 ~ 1821335 (+) True trnay-gua_7
TU83815 other downstream 976031 5746204 ~ 5754284 (+) True LOC111192936
TU83965 other downstream 1212200 5982373 ~ 5993994 (+) True c7h12orf75
TU84211 other downstream 2081057 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 3762586 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 3763175 8533348 ~ 8540123 (+) True LOC103041471

Expression Profile