RNA id: TU83692


Basic Information

Item Value
RNA id TU83692
length 250
lncRNA type intronic
GC content 0.38
exon number 2
gene id G62054
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5042509 ~ 5043811 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGTCCCCCGAGAATGGCGCAAAACAaagataactgcttaatctaTCATAGTAAACattgtgagggacaaaaatgttgtgtagtctgagcttggcattagACTGTATGTTCCTTTCAttagaaaatctccattcaaaatgcggTGTTGTCCAAGACTAGACTCTTGTTTTGCAGATACTAGCTCCATGTATTTTcaaggatttaaaaaataaatttgtgcACAGTGTGCTGTAAGGGACATAGCCAGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83634 lncRNA downstream 246499 4795715 ~ 4796010 (-) True G62000
TU83631 lncRNA downstream 272336 4769963 ~ 4770173 (-) True G61997
TU83586 lncRNA downstream 407088 4635153 ~ 4635421 (-) True G61955
TU83576 lncRNA downstream 416402 4625497 ~ 4626107 (-) True G61945
TU83574 lncRNA downstream 418299 4623887 ~ 4624210 (-) True G61943
TU83694 lncRNA upstream 20827 5064638 ~ 5071737 (-) True G62056
TU83701 lncRNA upstream 149749 5193560 ~ 5194781 (-) True G62063
TU83726 lncRNA upstream 249044 5292855 ~ 5293062 (-) True G62083
TU83727 lncRNA upstream 308117 5351928 ~ 5352169 (-) True G62084
TU83730 lncRNA upstream 316734 5360545 ~ 5360794 (-) True G62087
XM_022671256.1 mRNA downstream 580984 4447876 ~ 4461525 (-) True LOC107197701
XM_022671254.1 mRNA downstream 616353 4335118 ~ 4426156 (-) False LOC103039416
XM_007252710.3 mRNA upstream 270746 5314557 ~ 5336399 (-) True LOC103042505
XM_022671259.1 mRNA upstream 412898 5456709 ~ 5494651 (-) True LOC103037729
XM_022671260.1 mRNA upstream 412898 5456709 ~ 5494645 (-) False LOC103037729
XM_022671261.1 mRNA upstream 600698 5644509 ~ 5653023 (-) True cmas
XM_007229732.3 mRNA upstream 614637 5658448 ~ 5663281 (-) True kcnj8
TU83573 other downstream 419932 4622213 ~ 4622577 (-) True G61942
XR_002650185.1 other downstream 660458 4342917 ~ 4382051 (-) False LOC103039416
XR_455047.3 other downstream 660459 4335118 ~ 4382050 (-) True LOC103039416
TU83243 other downstream 1384241 3651966 ~ 3658268 (-) False G61676
TU83189 other downstream 1493807 3544185 ~ 3548702 (-) False mdm1
TU84110 other upstream 1330658 6374469 ~ 6374980 (-) True G62377
XR_002650186.1 other upstream 1589199 6633010 ~ 6695384 (-) False pphln1
TU84255 other upstream 1627799 6671610 ~ 6737948 (-) False G62484
XR_002650150.1 other upstream 1678291 6722102 ~ 6723530 (-) True LOC111192868
TU84254 other upstream 1691352 6735163 ~ 6737948 (-) True G62484

Expression Profile