RNA id: TU83729


Basic Information

Item Value
RNA id TU83729
length 241
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G62086
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5360545 ~ 5360785 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttaaattttccattcttttaaatagcaggatactttgatttttatttctcagcCCGGACgagacccggcccgaggaaagtaatggaaaatctcgggtcagtccaggctccaggaaatagtcatctgttttttaatactatttttattttatataaagctacggcctgataatcaccatataacAACGTATTactgttaacgaaaacgaacgaaataacgaaaactgaaagtgaaagttccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83707 lncRNA upstream 45343 5311905 ~ 5315202 (+) True G62069
TU83673 lncRNA upstream 357641 4999241 ~ 5002904 (+) True G62036
TU83667 lncRNA upstream 372827 4987422 ~ 4987718 (+) True G62030
TU83638 lncRNA upstream 525073 4835272 ~ 4835472 (+) True G62004
TU83633 lncRNA upstream 564534 4795722 ~ 4796011 (+) True G61999
TU83741 lncRNA downstream 71291 5432076 ~ 5432368 (+) True G62098
TU83750 lncRNA downstream 87043 5447828 ~ 5454163 (+) True G62103
TU83802 lncRNA downstream 164993 5525778 ~ 5527065 (+) True G62146
TU83847 lncRNA downstream 281875 5642660 ~ 5645198 (+) False G62162
TU83848 lncRNA downstream 281875 5642660 ~ 5645198 (+) False G62162
XM_022671258.1 mRNA upstream 98994 5251133 ~ 5261551 (+) True ifrd1
XM_007252707.3 mRNA upstream 659110 4675359 ~ 4701435 (+) True LOC103041372
XM_022671246.1 mRNA upstream 1261156 4083683 ~ 4099389 (+) True mcm10
XM_022671247.1 mRNA upstream 1261156 4083683 ~ 4099389 (+) False mcm10
XM_022671245.1 mRNA upstream 1285982 4054051 ~ 4074563 (+) False LOC103027723
XM_022671166.1 mRNA downstream 60983 5421768 ~ 5423304 (+) True LOC107197570
XM_022671267.1 mRNA downstream 379770 5740555 ~ 5765785 (+) False LOC111192936
XM_022671266.1 mRNA downstream 392517 5753302 ~ 5765785 (+) False LOC111192936
XM_022671265.1 mRNA downstream 397368 5758153 ~ 5765785 (+) False LOC111192936
XM_022671268.1 mRNA downstream 398274 5759059 ~ 5765785 (+) False LOC111192936
TU83070 other upstream 2056547 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 2056547 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 3425046 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 3538769 1821689 ~ 1821776 (+) True trnay-gua_8
trnay-gua_7 other upstream 3539210 1821248 ~ 1821335 (+) True trnay-gua_7
TU83815 other downstream 385419 5746204 ~ 5754284 (+) True LOC111192936
TU83965 other downstream 621588 5982373 ~ 5993994 (+) True c7h12orf75
TU84211 other downstream 1490445 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 3171974 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 3172563 8533348 ~ 8540123 (+) True LOC103041471

Expression Profile