RNA id: TU83775



Basic Information


Item Value
RNA id TU83775
length 618
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G62125
representative True

Chromosome Information


Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5443582 ~ 5450277 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GGCGTAACTTAAAAGGCTCCTCAGCCAAAGACTGAGGAGACTCTGTATAACCAGGTGAGACAGGATCAAAGTGAGGTAAAACATTTCTTACCTCAGTCTCCACAACTGGCACCACCACTGTCGTCTCCGGCCCATCCGAACTATCCACCAGCTCCGCCGGTGAAGTACTCTCCTCAGGAACAGCACTCTCCACAAGTGGGGAAGGAACACCACACGTAGTATCTACCACTGGTTGCACACTCAACACACCAACTGCAACTAAATGATCAAAAACCAAGTTATATATGTCCTTCTTTAACATAGCCCGTGTTGTGGGAAGCTTAAAGTGGTCAGCTATTAAAATCAGGTCATCCTTCTTACAACATTGTAGCGCTTCACAACTAGGTGActcaaaaaaacattgcagATCAAACGAAGCCATTTCTACAAGTAACGAGCGACAATTAACCAAATTCTAAACACTAGCAACTACTACCAACCAAAATTGTTTCCACAACCACCATCATCACATGCTCAACACCCACTAGTGGGGTAGGCGGGACCAGTAATtatcccggacgagcccccaATTGTTATGCTCCTCCCCTTTTGTCTAGGGGGTGAGGAGGAGTAACAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83770 lncRNA downstream 11194 5432090 ~ 5432388 (-) True G62121
TU83732 lncRNA downstream 44393 5398954 ~ 5399189 (-) True G62089
TU83730 lncRNA downstream 82788 5360545 ~ 5360794 (-) True G62087
TU83727 lncRNA downstream 91413 5351928 ~ 5352169 (-) True G62084
TU83726 lncRNA downstream 150520 5292855 ~ 5293062 (-) True G62083
TU83804 lncRNA upstream 75516 5525793 ~ 5526860 (-) True G62147
TU83808 lncRNA upstream 78419 5528696 ~ 5530196 (-) True G62150
TU83915 lncRNA upstream 280751 5731028 ~ 5732187 (-) True G62210
TU83922 lncRNA upstream 309186 5759463 ~ 5761833 (-) True G62217
TU83948 lncRNA upstream 478215 5928492 ~ 5967717 (-) True G62237
XM_007252710.3 mRNA downstream 107183 5314557 ~ 5336399 (-) True LOC103042505
XM_022671257.1 mRNA downstream 243970 5000950 ~ 5199612 (-) True LOC103023194
XM_022671256.1 mRNA downstream 982057 4447876 ~ 4461525 (-) True LOC107197701
XM_022671255.1 mRNA downstream 1061535 4335118 ~ 4382047 (-) False LOC103039416
XM_022671259.1 mRNA upstream 6432 5456709 ~ 5494651 (-) True LOC103037729
XM_022671260.1 mRNA upstream 6432 5456709 ~ 5494645 (-) False LOC103037729
XM_022671261.1 mRNA upstream 194232 5644509 ~ 5653023 (-) True cmas
XM_007229732.3 mRNA upstream 208171 5658448 ~ 5663281 (-) True kcnj8
XM_007229731.3 mRNA upstream 214624 5664901 ~ 5726282 (-) False abcc9
TU83573 other downstream 821005 4622213 ~ 4622577 (-) True G61942
XR_002650185.1 other downstream 1061531 4342917 ~ 4382051 (-) False LOC103039416
XR_455047.3 other downstream 1061532 4335118 ~ 4382050 (-) True LOC103039416
TU83243 other downstream 1785314 3651966 ~ 3658268 (-) False G61676
TU83189 other downstream 1894880 3544185 ~ 3548702 (-) False mdm1
TU84110 other upstream 924192 6374469 ~ 6374980 (-) True G62377
XR_002650186.1 other upstream 1182733 6633010 ~ 6695384 (-) False pphln1
TU84255 other upstream 1221333 6671610 ~ 6737948 (-) False G62484
XR_002650150.1 other upstream 1271825 6722102 ~ 6723530 (-) True LOC111192868
TU84254 other upstream 1284886 6735163 ~ 6737948 (-) True G62484

Expression Profile