RNA id: TU83802


Basic Information

Item Value
RNA id TU83802
length 1252
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G62146
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5525778 ~ 5527065 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTCCGCGTAGGTTCTAGCGGGAAACTCGAAATCACGccacttttctcagccaatcaccaactcccacctgtccttaaaagacctccctcatacctgttctcccctgcttgcagacgcTGACATACGTTTTCGGGCGCCGGTCGTTGCCGCGTGGCTTCATGGTGTTTCTGCCATTTGTCATTGCCTGCTCTCAGTTTGCCGTTTTCGCCCGTCTGCGTGGCTGCTCGTTCGTAGTTGGCTCGATTTCCTGCTCGTAGGATCCATGTTGGTTTGTATTGCTCTCTGTTCTGTCGCTGGCGTTTTGGTTGGATCCTCGCTGTGTTTGCTGTTGGCGGTCTGGGTTCCTGTTTTGCTGGATCACGTGACCGTGTCGCGCTTGCCTTCGAGGCTTGCTGCTCCGATGCTTTGTCTCGGCTCGCAGCCGTGTGCTGAATCGTTCTGGTCTAGTGCTGAGGCTTTTCTCGGCGGTGTTCGGATAGTTGCTTGGTGTTTCTGCGTTTTCCACGGCTCTGTCCGGTGCCTGTGGCTGAGTTTGTACGCTTCGCTCGAGAAGTCTGGGCTGGATGGCTGTTTTTAAACCCGCTCCTGCTGGCACCCGATAGTTTTAGCCCCGCGCCCGCCCTCCGTTTTTTACGTTTCTGCCGCTCCGCACGCCTGCTTGTGTTGCTTACGTTTAGTGCTCGAAATTAACTTGGGTTTTTTATTGAACCAGCAATGTGGCGCTGATAGCCTGCTCCCTTCCtactgtccacacacacacgcccacgCCTCAGTGGAGCTGACCCTTCAGGCACTGCTTGCAAAGTGTTTCGTTCATGCAGCACCAAAACCTAATTTGATCGATGATAAATAAACTTAGTGTACTTGGTTAATCCTCGTTCGTTGTGATCTCATTCTCGCGACGCTCCTATGGTTCGTTTATCGGTCTTGGGCTTTACTGTTGCTGAATGTTATTGATGTGTCGTTCGCGATCGATCCGGCTCAGGAGCCGACTCTTCGAAGTCACCTATTGGAACCGGCTCTATTATGGGTGCCGTTTTCTCCATTTTATATACCTTCGTATTTTACACATTAATTTAGAAGCACTGTATTTGATATTTGTATTGTGgcactttttttgttataaagcATTGTTATGCAGCTGTTTTGCTCGTCGCAAGTGCCTATTGCGCTGCTTCTTATCTCGGACCGTACCCGTTCAATTGCTTTTCTGTACTCGCTTCCGTGCTGCTTATTGTCTCGGGCCgtgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83750 lncRNA upstream 71615 5447828 ~ 5454163 (+) True G62103
TU83741 lncRNA upstream 93410 5432076 ~ 5432368 (+) True G62098
TU83729 lncRNA upstream 164993 5360545 ~ 5360785 (+) True G62086
TU83707 lncRNA upstream 210576 5311905 ~ 5315202 (+) True G62069
TU83673 lncRNA upstream 522874 4999241 ~ 5002904 (+) True G62036
TU83847 lncRNA downstream 115595 5642660 ~ 5645198 (+) False G62162
TU83848 lncRNA downstream 115595 5642660 ~ 5645198 (+) False G62162
TU83846 lncRNA downstream 117778 5644843 ~ 5652784 (+) True G62162
TU83864 lncRNA downstream 167332 5694397 ~ 5698893 (+) True G62174
TU83866 lncRNA downstream 167332 5694397 ~ 5698893 (+) False G62174
XM_022671166.1 mRNA upstream 102474 5421768 ~ 5423304 (+) True LOC107197570
XM_022671258.1 mRNA upstream 264227 5251133 ~ 5261551 (+) True ifrd1
XM_007252707.3 mRNA upstream 824343 4675359 ~ 4701435 (+) True LOC103041372
XM_022671246.1 mRNA upstream 1426389 4083683 ~ 4099389 (+) True mcm10
XM_022671267.1 mRNA downstream 213490 5740555 ~ 5765785 (+) False LOC111192936
XM_022671266.1 mRNA downstream 226237 5753302 ~ 5765785 (+) False LOC111192936
XM_022671265.1 mRNA downstream 231088 5758153 ~ 5765785 (+) False LOC111192936
XM_022671268.1 mRNA downstream 231994 5759059 ~ 5765785 (+) False LOC111192936
XM_022671269.1 mRNA downstream 234448 5761513 ~ 5765785 (+) False LOC111192936
TU83070 other upstream 2221780 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 2221780 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 3590279 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 3704002 1821689 ~ 1821776 (+) True trnay-gua_8
trnay-gua_7 other upstream 3704443 1821248 ~ 1821335 (+) True trnay-gua_7
TU83815 other downstream 219139 5746204 ~ 5754284 (+) True LOC111192936
TU83965 other downstream 455308 5982373 ~ 5993994 (+) True c7h12orf75
TU84211 other downstream 1324165 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 3005694 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 3006283 8533348 ~ 8540123 (+) True LOC103041471

Expression Profile