RNA id: XM_022671266.1


Basic Information

Item Value
RNA id XM_022671266.1
length 2506
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC111192936
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5740555 ~ 5765785 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agggattcagcagtacgttcctattttaagtgtgcaGTCTTTCCCGGTTTGTTTTGTTctctgactcctcctgctgctccttccccaacactaactccacccaCCGAGGTTGCCAGCACTACAGCAGCGCAGCAAAGCAAAGGagctagcagagctggttcagttaaacctcagctgctacacagcttaaaaagcctcagcatgccaaagcaggaatataacaagagtgaatattggcagGGAGTTTGAACGGTGGAGACTTAGAGCTTAAAAAGACTCCAAGACCGACCCAGaactgctacttttctcctgaacagTTACGGAAGACTTCAGATGACAACAGTGTGCCACAGAATGCAAAGAAAGTGACAGCATCCCAGCAGAATATTTCAGCAGCTCTTCAAAGTgctttaaagAGCACATCACAGACATTGGTGACACCCATCATTCATACCAGTACCCAAACAGACCCACCCAGCCTTTTATGTCGGGCTACACAACTTTCTAGGGGTACATTAGGCCCTCACTTTAGAAGCAAAGGTACCCAAACAGAGTCTTTCATCACAAGTACGAGTATTGCCCAAGTACTTTGGATGCACCGTGGGGGCCTGTACACTCTACACCCATTAAGTCTGTTGTTCCAAGGGCAGCTAAAAGACCTTGGgtagatgaagaggaggaggaggatgaagagagTGACCACTGCACAGTACCAACTGAACCCCAGTCCTCCACCTATGATCCAGCTCAGTCAATAAGCAGTGTAATAGAACCATCACAGATTACTGATACATCTTCAACTGGTTACAAAGACTTCAAGTACATAGTATTTGAGAAGAACCTCATGGAACTTTTTGAAACTTGTCCAGTGTGCAGCCGGTTATCAGATGTAAAGACCTACAGACGAGGAACGTTTGtgtccatcatccaaaaatgccATCACTGCCAATATTCCAAGAAATGGAAGAGCCAGCCACTAATTGGGAGCTCCCCTGTAGGCAACATACAACTGTCTGCTGCTATATACTTCACAGGCTCTTCATATTTTCAAGTCAAAAAGGTATTTCAAGCCATGCATCTGCGAAACATCAGCTACACAGCATTCCGTAGGCATGCAAACAGTTACCTAGAACCAGCTGTGGTACACAAATGGCGCCAGTACCAAGAAACTGAATTACAGTTCTTGAGCCAGAGAAAAGTCAAGATTGGAGGGGACATGCGAGCAGATTCACCAGGCCACTCTGCCAAATATGTAACTTACAGTGTAATGAATCTGGAGACCAACAACATCATCGACATTCAACTAATACAGAGCAATGAGGTTGGAGGGAGCCACAACATGGAGAAAGAGGGACTGAAAAGAAGCCTACAGCATTTGGAGTCCAAGGGTGTGGCAGTCGATTACATTGTCACTGACCGTCATCCCCAGATCCAAAAATTTCTCCGTGACAGACAAATAACCCACTACTATGATGTCTGGCATTTGGAAAAAGGTCTTTCTAAGAAATTAGGAAAGGTGGCGAAAGAAAAGGACTGCGAGGTGGTGAAGAAGTGGCAGCAGGGAATCAAGAACCATGTCTACTGGTGTGCAACTTCCTCATCCTCAGGGCCAGAGAAAGTTGCCAAATGGACATCTGTGGTGAACCACGTGCAAGACAAACACACCCACGACAACCCTCTCTACCCACAATGCCAACATCCAATCCGTCAGAGCAGAGATCGTAAGAAGTGGTTTCAGCCAGGTTCCAAAGCCCTCTACAAATTGGAGAAAATACTGACCAATAAGAGGGTCCTCGGTGACGTTGAGAGGCTAAGCTCCCGTTACCAGACCTCAACACTGGAGGCATTCCATAGTGTGATTTTGCGCTTCACACCCAAAAGTGTGGTCTTCCCTTTCATTGGGATGTTATGCAGACTATATCTGGCTGCAATGCACTTTAATGAAAATGCTGGTCGGACTCAAGCCAGAACAACTTCAGGAGTACTGAGGTACCGATTGCATTTTCCAAAGGCCAAAAAGGGAGGACACACCGTGAAGTCAGAAAAATCACCACCAACATACTGCTACGTCTACAACCTGATTGCTGCAGTGTTTGACGACATCGTCCCCAATCCCCAGCCCTACTTGGAGGAGTTCAAAAAGATCCCTATTCCTGGTGACTTGTCCTCAGAGTTCTACCGTCCTCCACTGACAGAAGCTGTGGCTGCGTACAGGTCTCGCTTTAGCCAAGAGCAGCCCTAAAGCCGACATATTGGCCCTCTGTGTCTGGGAATTCCCTTCTGATCCGCAGGACAACACAAGCTGGAACAACAACTCGGACCTTTCTCCCTAAATAACCCCAGCACCAGCTTACAAATGACCTGTAGGCCAGATGTCTGCATCGCCTAGTAAACAGAGAAATTTGTAAATTCTGAACATTGTTTCgatgttattattttgttttgcctTATTTTTCAATTCTACtctatgtaaatataataaaaaggtaTTTAATTTGACAATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83864 lncRNA upstream 54409 5694397 ~ 5698893 (+) True G62174
TU83866 lncRNA upstream 54409 5694397 ~ 5698893 (+) False G62174
TU83846 lncRNA upstream 100518 5644843 ~ 5652784 (+) True G62162
TU83847 lncRNA upstream 108104 5642660 ~ 5645198 (+) False G62162
TU83931 lncRNA downstream 13910 5779695 ~ 5780084 (+) True G62224
TU83933 lncRNA downstream 162541 5928326 ~ 5967734 (+) False plxnb2
TU83972 lncRNA downstream 232223 5998008 ~ 5998229 (+) True G62258
TU83995 lncRNA downstream 268382 6034167 ~ 6040514 (+) True G62276
TU84002 lncRNA downstream 279389 6045174 ~ 6045425 (+) True G62280
XM_022671166.1 mRNA upstream 329998 5421768 ~ 5423304 (+) True LOC107197570
XM_022671258.1 mRNA upstream 491751 5251133 ~ 5261551 (+) True ifrd1
XM_007252707.3 mRNA upstream 1051867 4675359 ~ 4701435 (+) True LOC103041372
XM_022671246.1 mRNA upstream 1653913 4083683 ~ 4099389 (+) True mcm10
XM_007229723.3 mRNA downstream 16306 5782091 ~ 5967735 (+) True plxnb2
XM_022671149.1 mRNA downstream 216451 5982236 ~ 5993648 (+) False c7h12orf75
XM_015605262.2 mRNA downstream 216451 5982236 ~ 5993648 (+) False c7h12orf75
XM_022671167.1 mRNA downstream 247061 6012846 ~ 6015114 (+) True LOC111192904
XM_022671271.1 mRNA downstream 451026 6216811 ~ 6334340 (+) True nell2
TU83070 other upstream 2449304 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 2449304 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 3817803 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 3931526 1821689 ~ 1821776 (+) True trnay-gua_8
trnay-gua_7 other upstream 3931967 1821248 ~ 1821335 (+) True trnay-gua_7
TU83965 other downstream 216588 5982373 ~ 5993994 (+) True c7h12orf75
TU84211 other downstream 1085445 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 2766974 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 2767563 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 3667652 9433437 ~ 9440564 (+) False LOC111192948

Expression Profile