RNA id: TU83866


Basic Information

Item Value
RNA id TU83866
length 421
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G62174
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5694397 ~ 5698893 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTAATAGAATTCTGCCCATAACaaattatactttaactctttcaccctctcctaTTCCCCCAATTGTGGCTCCATCATGTCTGCTACAAAAGTTGAGGTGTCAATCTTCCACTATCTCTGACCATTCATCTCTGCAGGGACCCACATCGTTTCTATGCTAATTTGAGACCCCCATTAAAGTGACCACCCTGCAGTGTTCAAAGCAGGATCCAATGTATATAATGCCCCCTCAAAATATCCCTAGTTAGATTGGTTTTGATCGACTGTGAGCTGTACCCatactctctgtgtgtgtcaatAAACTCAAGTCAACTCTGAAGCCGTCTCCTGACTCCTGAATCGGACACCTGGTTCCTGAAGGCCGAATTTCTAACATTAGAATAAGAATTCCATAAGCTTTTTCCAGTTATCAAACAGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83846 lncRNA upstream 41613 5644843 ~ 5652784 (+) True G62162
TU83847 lncRNA upstream 49199 5642660 ~ 5645198 (+) False G62162
TU83848 lncRNA upstream 49199 5642660 ~ 5645198 (+) False G62162
TU83802 lncRNA upstream 167332 5525778 ~ 5527065 (+) True G62146
TU83750 lncRNA upstream 240234 5447828 ~ 5454163 (+) True G62103
TU83833 lncRNA downstream 59544 5758437 ~ 5765783 (+) False LOC111192936
TU83931 lncRNA downstream 80802 5779695 ~ 5780084 (+) True G62224
TU83933 lncRNA downstream 229433 5928326 ~ 5967734 (+) False plxnb2
TU83972 lncRNA downstream 299115 5998008 ~ 5998229 (+) True G62258
TU83995 lncRNA downstream 335274 6034167 ~ 6040514 (+) True G62276
XM_022671166.1 mRNA upstream 271093 5421768 ~ 5423304 (+) True LOC107197570
XM_022671258.1 mRNA upstream 432846 5251133 ~ 5261551 (+) True ifrd1
XM_007252707.3 mRNA upstream 992962 4675359 ~ 4701435 (+) True LOC103041372
XM_022671246.1 mRNA upstream 1595008 4083683 ~ 4099389 (+) True mcm10
XM_022671267.1 mRNA downstream 41662 5740555 ~ 5765785 (+) False LOC111192936
XM_022671266.1 mRNA downstream 54409 5753302 ~ 5765785 (+) False LOC111192936
XM_022671265.1 mRNA downstream 59260 5758153 ~ 5765785 (+) False LOC111192936
XM_022671268.1 mRNA downstream 60166 5759059 ~ 5765785 (+) False LOC111192936
XM_022671269.1 mRNA downstream 62620 5761513 ~ 5765785 (+) False LOC111192936
TU83070 other upstream 2390399 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 2390399 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 3758898 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 3872621 1821689 ~ 1821776 (+) True trnay-gua_8
trnay-gua_7 other upstream 3873062 1821248 ~ 1821335 (+) True trnay-gua_7
TU83815 other downstream 47311 5746204 ~ 5754284 (+) True LOC111192936
TU83965 other downstream 283480 5982373 ~ 5993994 (+) True c7h12orf75
TU84211 other downstream 1152337 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 2833866 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 2834455 8533348 ~ 8540123 (+) True LOC103041471

Expression Profile