RNA id: TU83933


Basic Information

Item Value
RNA id TU83933
length 1750
lncRNA type sense_over
GC content 0.36
exon number 2
gene id plxnb2
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5782091 ~ 5967735 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagaaatcaatatttggtgtattaaccctgtttttaatcacagttgtcatgcatcttggcatgttcgccactcctggtgcaaaaattcaagcagtttagcttggttttatggcttgtgatcatccatcttcttcttgattatattccagaggttttcaatttggtaaaaaaaaaatatatatataaattttattGTTTAGTTGACGACCACTGCATCTTTTTACAGCAAATAACTGTGGAGCAACGTCGGTCACATTCCTTCTTGAGGTCACTTCATGTGGAATTTATGTTGCCTTGGGTGTCTTATGGGTGTAAATGCAGTACGACTGTATGCATAATCATGCCTTTAAAGAAGATGTTGCTTTTATTTTCCTTCTGTTCTGTGTTGGTGATTTTCGCATGACCAGATGCTTTGTCCAATCCTTTTTGCCGCTGCTAGTTTATGTTAAGAGAAGATGTATATGAGGAAAGTTGTTGGCCAGGAGAGGGTAGGAATCTCTCCACTGCTTTGGTTAAAGGTACCACAAGTCTCATACTGTTCATGTCACCCAAAGTAAACTCCCAGAACATTCCATACCTGCCACAATATTGCGTTATTTAAGAATATTCTTTGCATTccacatccatccatcatcacaGGTTATTAGTCCAGGTCCATTTGTCCACCATTTAAAAGTCTGATGTGTCGATTTTTAGcaagcatttttttgttttagctgtttttaacgCCTTTACTTTTTTGTAATCATGAACTGCAGCACACAGGACTTTGcgtacatttgttttatttttttggaacatttaacttttttaattctttgttACAACCGCCGTAAGATCTGCTCAACTAGGAGGAGCGCCTTGTCATCCTAAACATCGACAAAgagattttacacattttgacctTTTGATTGTGTCGAAGCTCGAATGTTGCTATTTCTCTCACCATCTGCTCTTCTAGCCTCTTGAAAAGCGGTTGATTACAAATAGCTCTGATTGCAAGGCATGACTGGCTGTAATTTGGAAGGACAAAGAATAAGTCAGtgattaaatacataaaaggaCTTAATTCAGCTGAACAAGGCCTTCTAATCTTtcacttgttaaaaaaaaaaaactgtgcaatTCTTAGAACTGTCactgtggagttttatgttgaTTTTAGAGCTTACCAAAGTTTAGTACTGTTCTGAACTGTCTGtgtttaatcattattttccctttaaacttttttttgagaaaaaaagaattgtttatcatgttttagGTCCTAAAGGACGAGTACAGGACTTGTTATCGACTAAGTGCGTTTTATCTTGCTAATTGATGGTACTTATGATTCAACGGTCTGACTCAGATGCTCCATGCACTACACATATCAATAGATGTCTAtgctgtgtatttttattattattattcttttttaatgaaTCCAGACTTtaaatctctccatccttcctgttcatgattttcttttctgttttacgAGAACGCATCGGCATATTGTGAATTCTTCGGTTTTGCCATTTATCTATCAGGAAGTGCCTTAATGAAACATGAGTAATAATAATCAGAGCTGTGGTGATTGTGGCTGTATTCGAGACTGCAATAGTGACTAGGTTTTTTGTACAATATGCCATTTTGCGTATGTGCCTGTATGTGAGAAGTGCCACTATGGTTTGCTTAAAGCTGGTCAATGTTTTAAAAGGCAGTgaagaaaaaatgtattaaaagtatgttcttTGCCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83931 lncRNA upstream 148242 5779695 ~ 5780084 (+) True G62224
TU83833 lncRNA upstream 162543 5758437 ~ 5765783 (+) False LOC111192936
TU83864 lncRNA upstream 229433 5694397 ~ 5698893 (+) True G62174
TU83866 lncRNA upstream 229433 5694397 ~ 5698893 (+) False G62174
TU83846 lncRNA upstream 275542 5644843 ~ 5652784 (+) True G62162
TU83972 lncRNA downstream 30274 5998008 ~ 5998229 (+) True G62258
TU83995 lncRNA downstream 66433 6034167 ~ 6040514 (+) True G62276
TU84002 lncRNA downstream 77440 6045174 ~ 6045425 (+) True G62280
TU84006 lncRNA downstream 106555 6074289 ~ 6074626 (+) True G62284
TU84011 lncRNA downstream 203479 6171213 ~ 6172168 (+) True G62287
XM_022671267.1 mRNA upstream 162541 5740555 ~ 5765785 (+) False LOC111192936
XM_022671149.1 mRNA downstream 14502 5982236 ~ 5993648 (+) False c7h12orf75
XM_015605262.2 mRNA downstream 14502 5982236 ~ 5993648 (+) False c7h12orf75
XM_022671167.1 mRNA downstream 45112 6012846 ~ 6015114 (+) True LOC111192904
XM_022671271.1 mRNA downstream 249077 6216811 ~ 6334340 (+) True nell2
XM_022671272.1 mRNA downstream 442183 6409917 ~ 6426277 (+) True LOC103023466
TU83815 other upstream 174042 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 2624328 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 2624328 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 3992827 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 4106550 1821689 ~ 1821776 (+) True trnay-gua_8
TU83965 other downstream 14639 5982373 ~ 5993994 (+) True c7h12orf75
TU84211 other downstream 883496 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 2565025 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 2565614 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 3465703 9433437 ~ 9440564 (+) False LOC111192948

Expression Profile