RNA id: XM_007229723.3


Basic Information

Item Value
RNA id XM_007229723.3
length 8225
RNA type mRNA
GC content 0.48
exon number 39
gene id plxnb2
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5782091 ~ 5967735 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGCTAGTCGTCTACTTAGTTGGGTCTTTCTCCATGTCTGTAAACCGACACACACACTGGGCTTGTAGCTGGAGGGTCTGGATTAGCTGAACGCCCCCCTCTCTAAAGACTGCAGGGGAAGACCAGTCTCGTTATTAGCCTGGGTGAAAACCCCGGATCTCCAGTTCACTTCAGGGGCGGTTATATATCGCTCTCTCAGGTGTGTcgctgagtgagtgagtgtggttTCTGACTCTACCTGTGTGTGGATATATCGTCATGTGAtcactcagtcagtcagtcagtcagtgtgtgtgaggagggaCTGTTGACGGCGCTCAGAGAGTTTCCTCGGATTTAAAACACGGACTGAGCTGAGTCTCCTGCCGGCAGTTACTCGAGGAAAACACTGATTTTCTGGATCCGCGGGCAGTTAGGAGGCAGAATGATGTAGCTAaagtttttccttctctttttttgttcctCGGATGTTGAAATAGAAGCTCAACACTTTCAGAGGAGATTCAGAGGGGGCTTATCGTTCGTGTGTTGAACTTTATCCGTAAAGtgTGCGTGTGTCTGCTGCCCTGTCCAAGAGCACCATCAGAGAGCAATCGAAGGAGCGAGAGCAGGGAGAGGAGCGCGCAAAAATGGCATGGTGGTGTGTGGTGGCGCTCCTAATGCTGCTGTGCATGGACCACTCTTCCTGCGATCAGCCACATGCCCAGTTCTCCTCACAAACAGACATCAACACAGTGGTGCAGGACCCGCGCACGGGCCGTATTTACCTTGGCGCAGTCAACAACATCTACCAGCTTGATGCACGGCTGCAAAAGGAGAGTGCGTATACGACCGGCCCGAGGATGGACAATCCCAGCTGCACCCCGCCCATCACTAACCTGTGCACAGAAGCAAAGAATATGAATAACATCAACAAGCTCCTGCTGGTGAACCCGGACAGCAACACGCTGGTGGTGTGCGGCAGCATCTTCAGAGGCATCTGTTCTCTGCTGAATCTCAGCCACGTGGACGATGTGATTTACTTCAGCGATTCAAAAGGCGAGAAGACTTACGTGGCCACCACCGAGGAGACTGTGTCTGTGGTGGGGGTGATCTCCAGGTTTAAAAAGGGCGAGCCGGAACAGAACCTCACCGTCTTCCTGGTGGGTAAAGGTTATGGTGGCTCGGACAGTTCCAAGCTGATCAGCACGCGACTGCTGCAGGACTACCAGGAGTTGGTGAGGTTTGAGAACGTGGTGGAGGCGTCTACAGTGCAGGCCAGCCCTTTTGTACACCGCTACCTGCACGACTTCCGCCATGCCTTTAAAGACAGTGGCCACATCTACTTCCTGTTTTCGCGCACGCCGGGCAGCAGCGACAGCCGCAAGATCACGTTTGTTGCGCGGCTGTGCGAAAGCGACGACCACTACTATTCCTACACCGAGCTGCAGCTGAACTGTAGCACCAACGGAGAGAACACCTACAACAAGGTGCAGGCAGCATACCTGGGCACCCCCGGACGTGTTCTGGCTCAGAACCTCAGCTTGTCCAGTCCGTACGGAGAACTGAAAGCGAATGATAAGGTGCTTTTTGTGGTGTTCAGCTCTGATGAGGACAGCTCGATGTCAGCGCTCTGCATGTACCCCCTCAGCAGCATCAACCGCAGACTGGAGGAGGTGATCGAGTCGTGCTACAGAGGAGAACTTCTGTCTGACGACAAACCCAAATCTGTTTACTCACCTTACTCCTCCAAAACAGAGGCGATTTGCAACACAAAGAGAGAGCAGAAAGACATAATGACGAAGTACCCGTGTGGAGCGGAATTCTTGCCCTCGCCCCTGGCCAGTAAACCGGAGTACGCTCTGACCGTTAGCCCCGCGTACACCCGGAAAGGCATGCTGACAGCGGTGGCTGTGGCCGTGGAGAATGAAAACACTGTGGGCTTCCTGGGAACAAGCCAGGGGGAGGTGATTAAGGTGCACCTGGGAACTCACTCTGATGCCTATAACAGGGTTCCAATAGACGGTTCAGATGGTCAAGTTAACAAAAACCTGTTTTTTGACTCCAGCTTGGATCATCTCTATATTACCACTTCCAAAACGATCACTAAAGTTCCTGTGCAAGCGTGTGAACAGGAGACAAACTGTAACTCATGTGTGAAGTTGCGGGATCCGTACTGCGGCTGGTGTGTGCTGGAAGGCCGCTGCACCAGAAAGACAGAGTGCGGTCGAGGTGAGGAGAAGAACGGCTGGCTGTGGAGCCCTAACCAGCAGTGTGTAACCATCCAGGCCTTCGAGCCACCCAACATTAGCTGCAAGAAGACCACGCAGGTGAAGATCACTGTAAGTGCCATGCCAAGCATAGTGAGCGATAAGCTGGAGTGTGTATTCGGTGATTTTCGTGCCGGTGCTTATATGAGCGACAATGATGTCTTCTGTGCTCTCCCAAACCCAGGGAGCATCGATCAGACACCTGAAACACAAGACTTTCTAGCTCTTCCTGTGAAGATCATGGTGAACAGGAATATTGAGGTGGCGGTCGGCGAGTACAAGTTCTACAACTGTGCTGCAGTCGTGAAGAGGGCAGCAAACACACCGTGCATATTGTGTGTGACCAGTGAGTGGGGCTGCCAGTGGAACATGCAAGATCACACCTGCAGCGATGAAGACAGCACTGTGGACAGCACTAACATCATCAGGAACAGAGAGCAGGAGAAGTGTCCTCAGTTTGAGAATGCAGATCCTCTGCTGATTCCTGTCGGCTACAAAACCCCAATTCAATTTGAAGGCAAAAACCTGGAGAAGTACATGggAAAGTCCTTTCAGATTGGCACTGAGCTGATGAAGCAGGTGGGCGAAGTGACTGTTAAGGGGATCAAATTTCAGTTTGAAGGCTATGAGTTTGCATACGACAAAAAGCCAGAGGTGAATGTGACATTCTATGTGAAGGAAAAGGAGACCGAGAAGAAGATTGACAGCACACTGCAGGtggTGCTGTATAATTGTTCAGTGGGTCGTGAGGACTGCAGTCTGTGTAAGAACGCAGATGAGAAGTAtggctgtgtgtggtgtgccACTACGCGCTCCTGCATCTACAGAGATCGCTGTACTGAAGAGCTTCCTCAGTGCCCTGATCCCAGCATCACAGATaTTGTGCCACGGTACGGGCCAATGAATGGCAGTATCTTGGTCACTATTAAGGGTTCCAACCTGGGCATTAAAAAGGAGGACATTAAGAGAATCACAGTGGCTGGAATGCCTTGTGTACATAAAGCAGAAAAATACTCTGTGTCTACCAGtgttgtgtgtgagatCGGGCCGTGGACTAGGCCTCCTGGGGATGCGCTCCTTCATAGCACTGAGGGTCCGGTAGTGGTGCAATTGGAAGGTTCCAGGAGAGGAGACTCAAAATTTTACTTCCAATACAGGGACCCGATTCCTGAAAAAGTGCACCCCATTAGAGGACCTGCTCAAGGAGGCACAGTAATCACAATCACAGGACAATACCTGGACACTGCCAGTAAAGAAGACATTAGTGTCCAAGTGGCAGGAGTGCCCTGTGAAGTgctgacCTTTGGTACCACAATCACCTGTAAAACTGGTCCATATAATAAGGTTGCTGATTCTGTGAAGGTCACAGTTAAATACGGCAGTAAAACCTCTAAAGACGTGACGGAAACCTTCAGCTACGCCCCCAACCCAGAGATCATAGCCTGCGTCCCTCAATCCAGCTTTATGTGCGGCGGCCGGAGGATCGCAGTCCATGGTACCGGGTTTGACCTGGTTCAGAGTGCAGTCATGCGAGTGCTGCCCTCTACTGACGAGTTCAACAAGCAGTCCAGCAACGCAGAGTTTGTGCAGGTGGCTTTTAGTAAAAACGATACAGTGCTGGTGTTCCTCTCTCCTGTGGTGAATATGACGGACCATAATCGTTCCTTTAAGACAGTCGTTCAGCTGGACAACATCAAGAAGAACCTGACTGATTTTGAGTACCATCCAGATCCTTTCTTCTCAAATCTGACCAGCCCGATGTCCATCAGTGCAAGCAGCATCATCATTGTCCATGGTCGAGGTCTCTCTAAAGCCATGACAGCAGAAGAGGCACAAGCGTTTGTTGGAGATGCACCGTGTACAGTAAACTCCCTTCATGATGACAAGCTGATCCTGCAGGCCCCCTCCACCCCCCCTAGATCACGATCCAGACGCCAGCGCAGGGACACCAGCTCAGAGACCATGGAGCTAGTGgtgaaGTTTGGTCATGGAGAGTGGAATGTGGGATCTGTTCAGTATGAGAAGAAGAATGAGGTTCCTCTCTTCATCATCATCCCTGCAGTTCTCCTCCCCATGCTGTTCTTCATCGCTGTGTCTGTCTACTGCTACAGGAGGAAGAGTCAGCAGGCGGAGAGAGAGTATGAAAAGGTGAAGCAGCAGCTGGAGAGTCTGGAGGAGAGTGTGCGGGACCGCTGTAAAAAAGAGTTCACAGATCTAATGATTGAGATGGAAGACCACACCAGTGATATGAGTGAGGCTCGTATTCCGTTCCTGGACTATAAGACCTACACAGACAGAGTCTTCTTCCTGCCTTCTAAAGATGGGGCCAACGATGTCATGATCACAGGGAAACTGGATATTCCTGAGAACCGCAGGGCCATTGTGGACCAGGCCCTCAACCAGTTCTCCAATCTGCTCAACAGCAAGACGTTTCTTATCAATTTCATTCGTACTCTGGAGAGCCAGCAGGAGTTCAATGCCAGAAGTAAGGTGTACTTTGCTTCACTGCTGACGGTGGCTCTGCATGGAAAGCTGGAGTACTACACAGACATCATGAGAAccctgctgctggagctgatggAGGAGTACATCCACAGCAAGAACCCCAAACTGATGCTCCGCAGGTCAGAGACAGTAGTGGAGAGGATGCTTTGTAACTGGATGTCTATATGCCTCTACCAGTTCCTCAAGGACTCAGCAGGTGAACCACTCTACAAGCTTTTTAAAGCTATTAAGCACCAGGTGGAGAAAGGACCAGTGGATGCTAAGATGAAGAAGGCAAAGTATACCCTGAATGACACAGGCCTGCTGGGGGATGATGTGGAGTATTTTGTCCTGACGCTGCAGGTGCTGGTTCATGGAGAGGGTCCTGATGTGACTCCAGTGAAGGTGCTGAACTGTGACACCATCTCCCAGGTGAAGGAGAAAATAATTGAGCAGGTTTACAGGAACCTTCCCTACTCTCAGagacccacagtggacagtgttgCACTAGAATGGCGTCCTGGTTCAACAGGGCAGATTTTGTCTGACCTGGACCTGACATCACAAAAGGAGGGCAGGTGGAAACGTCTCAACACTTTAGCACATTACAACGTGAGAGACAACGCCACTCTAGTCTTGTCCAGAGTTCTGCATACGCAGCAGTCTTTCGACCAGAACCAAGACAGCCATGAAGAGAGGAGCGCTCTGCTGGAGGATGATAAAGTGTTCCATCTGGTGAGGCCAGCAGATGAGCTGGACGATGTGAAGTCCAAAAGAGGCAGCATGAAGGACAAAGCCACCACTAAAGCTATCACTGAGATCTATCTGACCAGGCTGCTCTCCATGAAGggcACGCTGCAGCAGTTTGTGGATGATTTCTTCCGCAGTGTTTTGTGTACAGGTACTGTGGTTCCTCCAGCCGTAAAATACTTCTTCGATTTCCTGGACGAGCAAGCGCACAAACACGAGAATGTAGATGAAGAGACCATCCACATATGGAAGACCAACAGTCTGCCTCTGCGGTTCTGGGTGAACATTCTGAAGAACCCTCACTTCATATTTGACGTTCATGTGACTGAGGTAGTGGATGCCTCGCTGTCCGTCATTGCCCAGACCTTCATGGATGCCTGCACCAAGACTGAGCACAAACTGACCCGGGAGTCCCCAAGTAATAAGCTCCTCTATGCAAAGGAGATATCCACGTATAAGAAGATGGTTGATGATTATTACAAGGGCATTCGTCAGATGGTGTCAGTCAGTGACCAGGACATGAATACACACCTGGCGGAGGTTTCACGGtctcacACAGAGAAGTTGAACACCCAGGTCGCATTGCACCAGCTTTATCAGTATGCCAGCAAGTACTATGATGGaATCATCTCTTCACTGGAGGAAGATCCTGCGGCTCAGAGTAAGCAGCTGACTCTCCGACTGCAGCAGATTGCAGCAGCGCTGGAGAACAAAGTCACGGATCTTTAGTGCAGAGCCTCAAAGGCTGGGTGGAGCCCCTCGCACTTCAGCCCAGGACAAACCCACCCTCCCCTCCTCTTCCCTCCCCCCTTCAGGACTCCAAAACTGAGCTGAAAGTTCGATATGATATGGAGCCTCCCTTTCTGATGAAAGCTGCAATCTTGTACCATGTTAATACacgttattacatttttaattcataTCTCTACAGCGCGTTTCTACACGTCTTTTGTTCTGAGTACTCAGTTCGGACTGAACGAGCTGAGAAATGAAAGGACTACGGATGGCTCTGAAGTCTCGTTACGGTACTCGGCCGATCTTTTCCGGCCACAAGGAATTTCAGTGTCGGTTTTGCAGTTCCCCTAGTAATTAATGTCTATTCTTCCTGTGTGAATGGAATCAGAtagtattatatgtatatatatttttacacgcgtaaaaaaaaaaaaaaaaagaaattttattGTTTAGTTGACGACCACTGCATCTTTTTACAGCAAATAACTGTGGAGCAACGTCGGTCACATTCCTTCTTGAGGTCACTTCATGTGGAATTTATGTTGCCTTGGGTGTCTTATGGGTGTAAATGCAGTACGACTGTATGCATAATCATGCCTTTAAAGAAGATGTTGCTTTTATTTTCCTTCTGTTCTGTGTTGGTGATTTTCGCATGACCAGATGCTTTGTCCAATCCTTTTTGCCGCTGCTAGTTTATGTTAAGAGAAGATGTATATGAGGAAAGTTGTTGGCCAGGAGAGGGTAGGAATCTCTCCACTGCTTTGGTTAAAGGTACCACAAGTCTCATACTGTTCATGTCACCCAAAGTAAACTCCCAGAACATTCCATACCTGCCACAATATTGCGTTATTTAAGAATATTCTTTGCATTccacatccatccatcatcacaGGTTATTAGTCCAGGTCCATTTGTCCACCATTTAAAAGTCTGATGTGTCGATTTTTAGcaagcatttttttgttttagctgtttttaacgCCTTTACTTTTTTGTAATCATGAACTGCAGCACACAGGACTTTGcgtacatttgttttatttttttggaacatttaacttttttaattctttgttACAACCGCCGTAAGATCTGCTCAACTAGGAGGAGCGCCTTGTCATCCTAAACATCGACAAAgagattttacacattttgacctTTTGATTGTGTCGAAGCTCGAATGTTGCTATTTCTCTCACCATCTGCTCTTCTAGCCTCTTGAAAAGCGGTTGATTACAAATAGCTCTGATTGCAAGGCATGACTGGCTGTAATTTGGAAGGACAAAGAATAAGTCAGtgattaaatacataaaaggaCTTAATTCAGCTGAACAAGGCCTTCTAATCTTtcacttgttaaaaaaaaaaaactgtgcaatTCTTAGAACTGTCactgtggagttttatgttgaTTTTAGAGCTTACCAAAGTTTAGTACTGTTCTGAACTGTCTGtgtttaatcattattttccctttaaacttttttttgagaaaaaaagaattgtttatcatgttttagGTCCTAAAGGACGAGTACAGGACTTGTTATCGACTAAGTGCGTTTTATCTTGCTAATTGATGGTACTTATGATTCAACGGTCTGACTCAGATGCTCCATGCACTACACATATCAATAGATGTCTAtgctgtgtatttttattattattattcttttttaatgaaTCCAGACTTtaaatctctccatccttcctgttcatgattttcttttctgttttacgAGAACGCATCGGCATATTGTGAATTCTTCGGTTTTGCCATTTATCTATCAGGAAGTGCCTTAATGAAACATGAGTAATAATAATCAGAGCTGTGGTGATTGTGGCTGTATTCGAGACTGCAATAGTGACTAGGTTTTTTGTACAATATGCCATTTTGCGTATGTGCCTGTATGTGAGAAGTGCCACTATGGTTTGCTTAAAGCTGGTCAATGTTTTAAAAGGCAGTgaagaaaaaatgtattaaaagtatgttcttTGCCTTAA

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06821 PLXNB; plexin B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83931 lncRNA upstream 2007 5779695 ~ 5780084 (+) True G62224
TU83833 lncRNA upstream 16308 5758437 ~ 5765783 (+) False LOC111192936
TU83864 lncRNA upstream 83198 5694397 ~ 5698893 (+) True G62174
TU83866 lncRNA upstream 83198 5694397 ~ 5698893 (+) False G62174
TU83846 lncRNA upstream 129307 5644843 ~ 5652784 (+) True G62162
TU83972 lncRNA downstream 30273 5998008 ~ 5998229 (+) True G62258
TU83995 lncRNA downstream 66432 6034167 ~ 6040514 (+) True G62276
TU84002 lncRNA downstream 77439 6045174 ~ 6045425 (+) True G62280
TU84006 lncRNA downstream 106554 6074289 ~ 6074626 (+) True G62284
TU84011 lncRNA downstream 203478 6171213 ~ 6172168 (+) True G62287
XM_022671267.1 mRNA upstream 16306 5740555 ~ 5765785 (+) False LOC111192936
XM_022671266.1 mRNA upstream 16306 5753302 ~ 5765785 (+) False LOC111192936
XM_022671265.1 mRNA upstream 16306 5758153 ~ 5765785 (+) False LOC111192936
XM_022671268.1 mRNA upstream 16306 5759059 ~ 5765785 (+) False LOC111192936
XM_022671269.1 mRNA upstream 16306 5761513 ~ 5765785 (+) False LOC111192936
XM_022671149.1 mRNA downstream 14501 5982236 ~ 5993648 (+) False c7h12orf75
XM_015605262.2 mRNA downstream 14501 5982236 ~ 5993648 (+) False c7h12orf75
XM_022671167.1 mRNA downstream 45111 6012846 ~ 6015114 (+) True LOC111192904
XM_022671271.1 mRNA downstream 249076 6216811 ~ 6334340 (+) True nell2
XM_022671272.1 mRNA downstream 442182 6409917 ~ 6426277 (+) True LOC103023466
TU83815 other upstream 27807 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 2478093 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 2478093 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 3846592 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 3960315 1821689 ~ 1821776 (+) True trnay-gua_8
TU83965 other downstream 14638 5982373 ~ 5993994 (+) True c7h12orf75
TU84211 other downstream 883495 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 2565024 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 2565613 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 3465702 9433437 ~ 9440564 (+) False LOC111192948

Expression Profile