RNA id: TU83965


Basic Information

Item Value
RNA id TU83965
length 2044
RNA type TUCP
GC content 0.41
exon number 4
gene id c7h12orf75
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5982236 ~ 5993994 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttttttggtcttctGCCTTTAGTGTTCTGCGGGATGGGTTGTGGGAATTCCACAGCAACCAGCACAGCCGGAGGTCGGCTGGAGGCTGCCAGAGATGAAACCGATGATCCTCCTCCAGAGGATGAGAAGAGGAAGAACTATGGAGGAGTCTATGTGGGCCTACCTGCTGACCTCTGCAATGTGACTGCAGCCCAAACTCCCTCCATGCACAAAGgtctgtcctgtggagcttcaGATGAAGAAGTGCTGCGTCGTGACATCAGCATGGAAGCCACTCACTGACTGAACAGGACACAATAACCAACACTACAAGCCAATCATCTCTtctcctttatcctttatcgAGGAACTGATATAGGACCAGACCATGTACGGTCAAAGGACAGGTTGAGATGCAGAACTGAATGAATGGAACCAGGGTTTTTCTCCAGTTACTGATCCTTGTTTTGAGGAAACCTCATCTCTAAGCTGAGATCAGGCTTACTAAAGGCCAAACTATTTTGTATCTGAGAGCAAGGCCCTCATAAGTGGGTTCCACGTGGACAGGGGCTCTGTGTGGGTTTCTACTTGTTTTGTTACTGggacaacattttttaaagaaggGACCAAACTAAGACAgatctaaatgtattttaacttaatgtATATTGAAGGATTGAAGTAATCTGCATGGAAAGTCCTACCAACTTTGTCTGCGGATTTCAACCAGGTGTGACTGACCACCTGATACACTTAATTTTGAACCGTCTGGGTTCTCCTGTGTTGGATATATACTTAATTTCTTCAGGACTTCACCATCCCATACACTGCCTGCCTCCGCCTGGGTAATATAGGGTGTTTTCACTGCCACTGCTTTCTTCAGGGGAAAACAAACTTTGTAACTAGGACAGAGTCGACACACTTCAACTTCAGGTCACCATGTGCACTCAGCTCTCCCTTGTGGAATTGTAGacactgtgtgtttaagtgtgtgtttgagagtgagATAAAAAGGAAAGTGAAAGTTTGGCTTAGAGTGAAAGTGATGAACAGAGTTGAGAGTGGATTCACATGAGCTTTCTGAAAAGGGTCACCAAGTGTCATCTCTGCTTCACTCTGATCTAAAAGGACTCGCCCACATTCCTCCTCAGTGCTCTTAAAGCAACAGCTCCATCAACAGCATCATTACTTTCAGGTAACAGGGCTATAGTGTTTTGATTAGTCATGCggttaaaacattttcttatgTTGTGTATTGTTCCATTTAGAGGTGCATAAACAATGTTAGATCACTTCAAGAAATGTATTACTGCCAGAACTCAGTGAGAAAcagtattttaacattatatgcAGGGCAGTATCAGCATTACTCGACATACTCTGCCCAGCACATTTTAGAAAAttccctgctttaacacacccacAACAACTACAACTGAAAGGGCTtgataatgttaaatattaattaaatcagGTGTGTAGGAACAAGGGAAAGCCATACATTTGCAGGACAGGGGGGCATTAGGACCAGGACCAGGAATGAGGAACCCTGCTGAGTGAATTTAtgcatactggattataaggcgcactatcaataaacgtctattttctagtctattttcatacttaAGGCACACTAAATTATAAGGCGCTtcatgcgacactagtaaggaaaagGGGTGTTACcaagttttccttctaattcagcaggttttgcTGCTGGGTGgagccttatagtgtgaaaaatacagtacataaaaaagCATACCAAATATTCAAAAAAGTCCAAAagatttttaaatcaaacattAAATCTATgttacatacagacagacaacaTAAAAGCACATCAGACACACCATATGACTTAACAGTGTCTTGAAGTTGACTTACatattgtatttatgtatttgtttaattgGCATGACGACCATTTACCAGGCTGCAGGGTTTTCAAACCTTATCCACAAAGGGCTTAGCTTCTAAACAGCTAGCAACACATCTGATTCCACTGGTTTAATCAATctaaattttaaaaacaaataatttgcaaatatatata

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83933 lncRNA upstream 14639 5928326 ~ 5967734 (+) False plxnb2
TU83931 lncRNA upstream 202289 5779695 ~ 5780084 (+) True G62224
TU83833 lncRNA upstream 216590 5758437 ~ 5765783 (+) False LOC111192936
TU83864 lncRNA upstream 283480 5694397 ~ 5698893 (+) True G62174
TU83866 lncRNA upstream 283480 5694397 ~ 5698893 (+) False G62174
TU83972 lncRNA downstream 4014 5998008 ~ 5998229 (+) True G62258
TU83995 lncRNA downstream 40173 6034167 ~ 6040514 (+) True G62276
TU84002 lncRNA downstream 51180 6045174 ~ 6045425 (+) True G62280
TU84006 lncRNA downstream 80295 6074289 ~ 6074626 (+) True G62284
TU84011 lncRNA downstream 177219 6171213 ~ 6172168 (+) True G62287
XM_007229723.3 mRNA upstream 14638 5782091 ~ 5967735 (+) True plxnb2
XM_022671267.1 mRNA upstream 216588 5740555 ~ 5765785 (+) False LOC111192936
XM_022671266.1 mRNA upstream 216588 5753302 ~ 5765785 (+) False LOC111192936
XM_022671265.1 mRNA upstream 216588 5758153 ~ 5765785 (+) False LOC111192936
XM_022671268.1 mRNA upstream 216588 5759059 ~ 5765785 (+) False LOC111192936
XM_022671167.1 mRNA downstream 18852 6012846 ~ 6015114 (+) True LOC111192904
XM_022671271.1 mRNA downstream 222817 6216811 ~ 6334340 (+) True nell2
XM_022671272.1 mRNA downstream 415923 6409917 ~ 6426277 (+) True LOC103023466
XM_007245033.3 mRNA downstream 434012 6428006 ~ 6441574 (+) True pus7l
XM_007245029.2 mRNA downstream 607389 6601383 ~ 6632805 (+) True LOC103021937
TU83815 other upstream 228089 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 2678375 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 2678375 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 4046874 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 4160597 1821689 ~ 1821776 (+) True trnay-gua_8
TU84211 other downstream 857236 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 2538765 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 2539354 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 3439443 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 3652585 9646579 ~ 9650087 (+) True G63051

Expression Profile