RNA id: TU83972


Basic Information

Item Value
RNA id TU83972
length 222
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G62258
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5998008 ~ 5998229 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTTTTTCAGGGCTGaagaagagtcttttttttcagggctgaagaagagtcttttttttcagggctgaagaagagtcttttttttcagggctgaagaagagtctttttttttcagggctgaagaagagtcttttttttcagggctgaagaagagtcttttttttcagggctgaagaagagtcttttttttccagggctgagGAAGAGcctttttttccaggg

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83933 lncRNA upstream 30274 5928326 ~ 5967734 (+) False plxnb2
TU83931 lncRNA upstream 217924 5779695 ~ 5780084 (+) True G62224
TU83833 lncRNA upstream 232225 5758437 ~ 5765783 (+) False LOC111192936
TU83864 lncRNA upstream 299115 5694397 ~ 5698893 (+) True G62174
TU83866 lncRNA upstream 299115 5694397 ~ 5698893 (+) False G62174
TU83995 lncRNA downstream 35938 6034167 ~ 6040514 (+) True G62276
TU84002 lncRNA downstream 46945 6045174 ~ 6045425 (+) True G62280
TU84006 lncRNA downstream 76060 6074289 ~ 6074626 (+) True G62284
TU84011 lncRNA downstream 172984 6171213 ~ 6172168 (+) True G62287
TU84035 lncRNA downstream 178995 6177224 ~ 6177505 (+) True G62309
XM_022671149.1 mRNA upstream 4360 5982236 ~ 5993648 (+) False c7h12orf75
XM_015605262.2 mRNA upstream 4360 5982236 ~ 5993648 (+) False c7h12orf75
XM_007229723.3 mRNA upstream 30273 5782091 ~ 5967735 (+) True plxnb2
XM_022671267.1 mRNA upstream 232223 5740555 ~ 5765785 (+) False LOC111192936
XM_022671167.1 mRNA downstream 14617 6012846 ~ 6015114 (+) True LOC111192904
XM_022671271.1 mRNA downstream 218582 6216811 ~ 6334340 (+) True nell2
XM_022671272.1 mRNA downstream 411688 6409917 ~ 6426277 (+) True LOC103023466
XM_007245033.3 mRNA downstream 429777 6428006 ~ 6441574 (+) True pus7l
XM_007245029.2 mRNA downstream 603154 6601383 ~ 6632805 (+) True LOC103021937
TU83965 other upstream 4014 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 243724 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 2694010 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 2694010 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 4062509 1921395 ~ 1935499 (+) True LOC103036328
TU84211 other downstream 853001 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 2534530 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 2535119 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 3435208 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 3648350 9646579 ~ 9650087 (+) True G63051

Expression Profile