RNA id: TU84006


Basic Information

Item Value
RNA id TU84006
length 338
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G62284
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6074289 ~ 6074626 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

actcgtctccgaaataaaacacacagattaaaccttttaaaataaaaaaattacagcttgtgactcagcttaactagaaatgtggagaggaccgaaatgaactgaactgatcaggggtggagtgatcaaaagaaagaagtactaactaaaaattatttattgtgcaggccacttaggactaatttttactgatggaatatatctggtccatgtccttttagtaaaagctcatgatactattttaaggtcacctacagtcattttgcagaatttgtgcaccctttgttcaattttaaatctattaaataaataaaaaatatattatataaaagagtgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84002 lncRNA upstream 28864 6045174 ~ 6045425 (+) True G62280
TU83995 lncRNA upstream 33775 6034167 ~ 6040514 (+) True G62276
TU83972 lncRNA upstream 76060 5998008 ~ 5998229 (+) True G62258
TU83933 lncRNA upstream 106555 5928326 ~ 5967734 (+) False plxnb2
TU83931 lncRNA upstream 294205 5779695 ~ 5780084 (+) True G62224
TU84011 lncRNA downstream 96587 6171213 ~ 6172168 (+) True G62287
TU84035 lncRNA downstream 102598 6177224 ~ 6177505 (+) True G62309
TU84038 lncRNA downstream 108225 6182851 ~ 6184508 (+) True G62311
TU84039 lncRNA downstream 108225 6182851 ~ 6186130 (+) False G62311
TU84100 lncRNA downstream 289711 6364337 ~ 6364626 (+) True G62367
XM_022671167.1 mRNA upstream 59175 6012846 ~ 6015114 (+) True LOC111192904
XM_022671149.1 mRNA upstream 80641 5982236 ~ 5993648 (+) False c7h12orf75
XM_015605262.2 mRNA upstream 80641 5982236 ~ 5993648 (+) False c7h12orf75
XM_007229723.3 mRNA upstream 106554 5782091 ~ 5967735 (+) True plxnb2
XM_022671269.1 mRNA upstream 308504 5761513 ~ 5765785 (+) False LOC111192936
XM_022671271.1 mRNA downstream 142185 6216811 ~ 6334340 (+) True nell2
XM_022671272.1 mRNA downstream 335291 6409917 ~ 6426277 (+) True LOC103023466
XM_007245033.3 mRNA downstream 353380 6428006 ~ 6441574 (+) True pus7l
XM_007245029.2 mRNA downstream 526757 6601383 ~ 6632805 (+) True LOC103021937
XM_007245028.3 mRNA downstream 543719 6618345 ~ 6632805 (+) False LOC103021937
TU83965 other upstream 80295 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 320005 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 2770291 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 2770291 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 4138790 1921395 ~ 1935499 (+) True LOC103036328
TU84211 other downstream 776604 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 2458133 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 2458722 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 3358811 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 3571953 9646579 ~ 9650087 (+) True G63051

Expression Profile