RNA id: TU84011


Basic Information

Item Value
RNA id TU84011
length 956
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G62287
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6171213 ~ 6172168 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGGTTATTTCCCCATCCCTCTGTGCTCTCTGCAGGTCAGGAGTGGACGGATAGCGTAATTACGTTGTGGGGGAGATCATGGGGTGGAGCAAGTCTCTAGTGCCCTCATCCATCACTCCCCCGGAGGTCCTGCTTTTAAAATGTTGAGCTGTTTGGAGCAGCAagctgtgaatgtgtgtgtgtgtgtgtgtgtcctgtggaATGCCAATGAGGCTTGTGTGTTAGCGCTGCAAGATCATCAGCAGGTAACAGATGTGAGCTTAATGCCATCTGACAGCGTTGGAAGCTGACAGTCAGCGACGCATCGGATCTGCTATAGATTTAGCTTTGAGGCTCCATCAGTCAAGCtgtttatatagtatatatggaTTTCTACATTAATGACTTCTGCTATGCACGTCATAAAAGATGTCAGAATATTCATCATTCATACGTGTACAATCTTCTCTGAGACTCTGTACTAACTGCTATACACTTCTGTACACTGATATGACGAATACCATGTCCCATGATGTAACCAAAGAATTctccactgacctgtgggatatgtgtgggTTCTCCTGCAATGAATCTGTATGTGATTACCTGCACAACCTTGGAAAATAAATCTCCATACATCTGTTCTCCGCTATCAAACGCCGCTCTCAAGTCACAACATATACtcgtgtgggtgttcccaagccgtCCCTTGAAGTAAGACGTCATGATCAACTTAAGGTGGAGTGAAAAAGTATGTACCCCCTAcggatttcttttgtttttgctttttttgtcatactgatatttttcagatgatcaaacaaactttaatatcagacaaagataaagtaaataaaaaagtaaataaagtaggtaaaaaattatttattacatgaaattatgattttaaaaaagtttttttttttacttactttatttacttttaaaggaattaaaccattaaaccaatCTAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84006 lncRNA upstream 96587 6074289 ~ 6074626 (+) True G62284
TU84002 lncRNA upstream 125788 6045174 ~ 6045425 (+) True G62280
TU83995 lncRNA upstream 130699 6034167 ~ 6040514 (+) True G62276
TU83972 lncRNA upstream 172984 5998008 ~ 5998229 (+) True G62258
TU83933 lncRNA upstream 203479 5928326 ~ 5967734 (+) False plxnb2
TU84035 lncRNA downstream 5056 6177224 ~ 6177505 (+) True G62309
TU84038 lncRNA downstream 10683 6182851 ~ 6184508 (+) True G62311
TU84039 lncRNA downstream 10683 6182851 ~ 6186130 (+) False G62311
TU84100 lncRNA downstream 192169 6364337 ~ 6364626 (+) True G62367
TU84119 lncRNA downstream 224118 6396286 ~ 6396553 (+) True G62386
XM_022671167.1 mRNA upstream 156099 6012846 ~ 6015114 (+) True LOC111192904
XM_022671149.1 mRNA upstream 177565 5982236 ~ 5993648 (+) False c7h12orf75
XM_015605262.2 mRNA upstream 177565 5982236 ~ 5993648 (+) False c7h12orf75
XM_007229723.3 mRNA upstream 203478 5782091 ~ 5967735 (+) True plxnb2
XM_022671269.1 mRNA upstream 405428 5761513 ~ 5765785 (+) False LOC111192936
XM_022671271.1 mRNA downstream 44643 6216811 ~ 6334340 (+) True nell2
XM_022671272.1 mRNA downstream 237749 6409917 ~ 6426277 (+) True LOC103023466
XM_007245033.3 mRNA downstream 255838 6428006 ~ 6441574 (+) True pus7l
XM_007245029.2 mRNA downstream 429215 6601383 ~ 6632805 (+) True LOC103021937
XM_007245028.3 mRNA downstream 446177 6618345 ~ 6632805 (+) False LOC103021937
TU83965 other upstream 177219 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 416929 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 2867215 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 2867215 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 4235714 1921395 ~ 1935499 (+) True LOC103036328
TU84211 other downstream 679062 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 2360591 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 2361180 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 3261269 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 3474411 9646579 ~ 9650087 (+) True G63051

Expression Profile